Variant report

Variant	rs1326299
Chromosome Location	chr20:24532786-24532787
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13039850	0.86[JPT][hapmap]
rs1409371	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1575873	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1980821	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs1980822	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs1980823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2018095	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4552249	0.81[EUR][1000 genomes]
rs4815275	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4815278	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4815279	0.81[JPT][hapmap]
rs6036837	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6049781	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6076238	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6083555	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs6083556	0.80[ASN][1000 genomes]
rs6083558	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6083562	0.94[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs6132750	0.84[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6138330	0.85[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6138331	0.86[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6138332	0.86[JPT][hapmap]
rs8126241	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24525400-24541800	Weak transcription	Left Ventricle	heart
2	chr20:24527400-24540200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr20:24528800-24534000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr20:24528800-24534600	Weak transcription	Fetal Brain Male	brain
5	chr20:24528800-24538400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr20:24528800-24546400	Weak transcription	Aorta	Aorta

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