Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10086139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10092952	0.80[EUR][1000 genomes]
rs10095945	0.81[EUR][1000 genomes]
rs10102076	0.84[EUR][1000 genomes]
rs10110180	0.84[EUR][1000 genomes]
rs10283333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988945	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12708014	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1369455	0.86[ASN][1000 genomes]
rs1435459	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17209651	0.86[ASN][1000 genomes]
rs2043525	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs2217828	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28540594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3924926	0.84[EUR][1000 genomes]
rs6991201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6997778	0.82[EUR][1000 genomes]
rs7016339	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs7463230	0.87[EUR][1000 genomes]
rs7465150	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7838636	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13266641	CA8	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64178800-64192800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search: