Variant report

Variant	rs13268777
Chromosome Location	chr8:99544964-99544965
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99539907..99541519-chr8:99544944..99547169,2	K562	blood:
2	chr8:99542296..99548423-chr8:99550336..99556395,6	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10086870	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10099978	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10100378	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10100546	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10100577	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10101919	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10111264	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10955177	0.87[ASN][1000 genomes]
rs10955180	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10955181	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10955184	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10955185	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11781352	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11985382	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11994001	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12541026	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12542931	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12544768	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12547922	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12548477	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12550198	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12677171	0.88[ASN][1000 genomes]
rs13270534	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1893884	0.80[AMR][1000 genomes]
rs2001728	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs34580087	0.81[ASN][1000 genomes]
rs3802198	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4301421	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4332102	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734406	0.82[ASN][1000 genomes]
rs4734407	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4995528	0.81[ASN][1000 genomes]
rs6651181	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6985600	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7007360	0.81[ASN][1000 genomes]
rs7015739	0.95[AFR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7815227	0.92[ASN][1000 genomes]
rs7845395	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7845750	0.92[ASN][1000 genomes]
rs9642951	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027362	chr8:99469281-99715845	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv539689	chr8:99469281-99715845	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv891219	chr8:99526819-99643487	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv611808	chr8:99544765-99591736	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99490400-99547600	Weak transcription	Ovary	ovary
2	chr8:99500400-99558800	Weak transcription	Aorta	Aorta
3	chr8:99515000-99550800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:99518800-99551000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr8:99519000-99548400	Weak transcription	Fetal Stomach	stomach
6	chr8:99525800-99576400	Weak transcription	Pancreas	Pancrea
7	chr8:99526200-99549400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr8:99531000-99569600	Weak transcription	HMEC	breast
9	chr8:99531200-99561800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr8:99531400-99586400	Weak transcription	HSMM	muscle
11	chr8:99531600-99561800	Weak transcription	Esophagus	oesophagus
12	chr8:99532000-99548000	Weak transcription	HSMMtube	muscle
13	chr8:99533400-99566400	Weak transcription	NHLF	lung
14	chr8:99534600-99567200	Weak transcription	A549	lung
15	chr8:99534800-99549800	Weak transcription	Colon Smooth Muscle	Colon
16	chr8:99535400-99571600	Weak transcription	Gastric	stomach
17	chr8:99536800-99545000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr8:99539200-99548200	Weak transcription	NHDF-Ad	bronchial
19	chr8:99539200-99553000	Weak transcription	HepG2	liver
20	chr8:99542000-99546600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr8:99542200-99545600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr8:99542600-99545000	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr8:99542600-99546000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
24	chr8:99542600-99546600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr8:99542800-99546400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr8:99543000-99545000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr8:99543000-99545000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr8:99543000-99545400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr8:99543000-99546400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:99543000-99566800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr8:99543200-99545400	ZNF genes & repeats	Dnd41	blood
32	chr8:99543600-99553200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr8:99543800-99547600	Weak transcription	K562	blood
34	chr8:99543800-99548000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr8:99543800-99548400	Weak transcription	Adipose Nuclei	Adipose
36	chr8:99543800-99555000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr8:99544000-99547600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr8:99544000-99547600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr8:99544000-99548600	Weak transcription	Fetal Kidney	kidney
40	chr8:99544000-99552400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr8:99544000-99552400	Weak transcription	Placenta	Placenta
42	chr8:99544000-99552800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr8:99544000-99559000	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr8:99544000-99560800	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr8:99544000-99566800	Weak transcription	Brain Substantia Nigra	brain
46	chr8:99544200-99545800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr8:99544200-99552200	Weak transcription	Fetal Muscle Trunk	muscle
48	chr8:99544200-99558800	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr8:99544200-99559400	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr8:99544400-99545200	Weak transcription	NHEK	skin

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