Variant report

Variant	rs13269698
Chromosome Location	chr8:110230076-110230077
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 179 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:173)

rs_ID	r²[population]
rs10088496	0.81[ASN][1000 genomes]
rs10089544	0.81[ASN][1000 genomes]
rs10100690	0.82[ASN][1000 genomes]
rs10101048	0.81[ASN][1000 genomes]
rs10101050	0.81[ASN][1000 genomes]
rs10101189	0.81[ASN][1000 genomes]
rs10101520	0.81[ASN][1000 genomes]
rs10464819	0.84[ASN][1000 genomes]
rs10464848	0.84[ASN][1000 genomes]
rs10464849	0.84[ASN][1000 genomes]
rs10955508	0.81[ASN][1000 genomes]
rs10955510	0.81[ASN][1000 genomes]
rs10955512	0.81[ASN][1000 genomes]
rs10955513	0.81[ASN][1000 genomes]
rs10955514	0.84[ASN][1000 genomes]
rs11775991	0.81[ASN][1000 genomes]
rs11785243	0.81[ASN][1000 genomes]
rs11986161	0.81[ASN][1000 genomes]
rs11994164	0.81[ASN][1000 genomes]
rs11994227	0.81[ASN][1000 genomes]
rs11997974	0.81[ASN][1000 genomes]
rs12542811	0.81[ASN][1000 genomes]
rs12542959	0.81[ASN][1000 genomes]
rs12544150	0.81[ASN][1000 genomes]
rs12544503	0.81[ASN][1000 genomes]
rs12546169	0.81[ASN][1000 genomes]
rs12546985	0.84[ASN][1000 genomes]
rs12549347	0.81[ASN][1000 genomes]
rs12549397	0.81[ASN][1000 genomes]
rs12550383	0.81[ASN][1000 genomes]
rs12674513	0.84[ASN][1000 genomes]
rs12674533	0.84[ASN][1000 genomes]
rs12675753	0.81[ASN][1000 genomes]
rs12680886	0.80[ASN][1000 genomes]
rs13265151	0.81[ASN][1000 genomes]
rs13270022	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13282488	0.81[ASN][1000 genomes]
rs1380096	0.81[ASN][1000 genomes]
rs1380097	0.81[ASN][1000 genomes]
rs1380098	0.84[ASN][1000 genomes]
rs1380099	0.82[ASN][1000 genomes]
rs1458915	0.81[ASN][1000 genomes]
rs1458916	0.81[ASN][1000 genomes]
rs1458917	0.81[ASN][1000 genomes]
rs1458921	0.84[ASN][1000 genomes]
rs1458922	0.82[ASN][1000 genomes]
rs1458924	0.84[ASN][1000 genomes]
rs1458925	0.84[ASN][1000 genomes]
rs1458926	0.84[ASN][1000 genomes]
rs1458927	0.83[ASN][1000 genomes]
rs1548082	0.84[ASN][1000 genomes]
rs1548083	0.84[ASN][1000 genomes]
rs1585295	0.81[ASN][1000 genomes]
rs1585296	0.82[ASN][1000 genomes]
rs1585297	0.82[ASN][1000 genomes]
rs17364037	0.84[ASN][1000 genomes]
rs1947630	0.84[ASN][1000 genomes]
rs1947631	0.84[ASN][1000 genomes]
rs2007179	0.82[ASN][1000 genomes]
rs2054255	0.84[ASN][1000 genomes]
rs2067780	0.84[ASN][1000 genomes]
rs2125512	0.81[ASN][1000 genomes]
rs2168965	0.81[ASN][1000 genomes]
rs2199122	0.82[ASN][1000 genomes]
rs28413119	0.81[ASN][1000 genomes]
rs28437828	0.81[ASN][1000 genomes]
rs2882176	0.84[ASN][1000 genomes]
rs28870477	0.84[ASN][1000 genomes]
rs2926191	0.83[ASN][1000 genomes]
rs2926192	0.83[ASN][1000 genomes]
rs2926198	0.84[ASN][1000 genomes]
rs2926199	0.84[ASN][1000 genomes]
rs2926202	0.84[ASN][1000 genomes]
rs2926203	0.84[ASN][1000 genomes]
rs2926204	0.84[ASN][1000 genomes]
rs2926207	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2926209	0.84[ASN][1000 genomes]
rs2926213	0.84[ASN][1000 genomes]
rs2926216	0.84[ASN][1000 genomes]
rs2926217	0.84[ASN][1000 genomes]
rs2926218	0.86[ASN][1000 genomes]
rs2926220	0.84[ASN][1000 genomes]
rs2926222	0.81[ASN][1000 genomes]
rs2926223	0.84[ASN][1000 genomes]
rs2926250	0.81[ASN][1000 genomes]
rs2926254	0.81[ASN][1000 genomes]
rs2926255	0.81[ASN][1000 genomes]
rs2926256	0.81[ASN][1000 genomes]
rs2926258	0.81[ASN][1000 genomes]
rs2926261	0.81[ASN][1000 genomes]
rs2926264	0.81[ASN][1000 genomes]
rs2926268	0.82[ASN][1000 genomes]
rs2926270	0.82[ASN][1000 genomes]
rs2926271	0.82[ASN][1000 genomes]
rs2926273	0.82[ASN][1000 genomes]
rs2926275	0.82[ASN][1000 genomes]
rs2926276	0.82[ASN][1000 genomes]
rs2926279	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2926283	0.83[ASN][1000 genomes]
rs2980587	0.84[ASN][1000 genomes]
rs2980588	0.84[ASN][1000 genomes]
rs2980590	0.84[ASN][1000 genomes]
rs2980592	0.84[ASN][1000 genomes]
rs2980595	0.84[ASN][1000 genomes]
rs2980596	0.84[ASN][1000 genomes]
rs2980597	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2980598	0.84[ASN][1000 genomes]
rs2980599	0.84[ASN][1000 genomes]
rs2980601	0.84[ASN][1000 genomes]
rs2980603	0.84[ASN][1000 genomes]
rs2980604	0.84[ASN][1000 genomes]
rs2980605	0.83[ASN][1000 genomes]
rs2980608	0.83[ASN][1000 genomes]
rs2980609	0.84[ASN][1000 genomes]
rs2980612	0.82[ASN][1000 genomes]
rs2980613	0.82[ASN][1000 genomes]
rs2980615	0.82[ASN][1000 genomes]
rs2980616	0.82[ASN][1000 genomes]
rs2980617	0.82[ASN][1000 genomes]
rs2980618	0.82[ASN][1000 genomes]
rs2980622	0.82[ASN][1000 genomes]
rs2980629	0.81[ASN][1000 genomes]
rs2980633	0.81[ASN][1000 genomes]
rs2980635	0.84[ASN][1000 genomes]
rs3134471	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34979579	0.81[ASN][1000 genomes]
rs35978837	0.81[ASN][1000 genomes]
rs3890699	0.81[ASN][1000 genomes]
rs4130640	0.81[ASN][1000 genomes]
rs4236804	0.81[ASN][1000 genomes]
rs4257986	0.81[ASN][1000 genomes]
rs4273834	0.84[ASN][1000 genomes]
rs4291240	0.84[ASN][1000 genomes]
rs4311632	0.81[ASN][1000 genomes]
rs4332104	0.81[ASN][1000 genomes]
rs4339614	0.81[ASN][1000 genomes]
rs4358779	0.81[ASN][1000 genomes]
rs4389899	0.81[ASN][1000 genomes]
rs4389900	0.81[ASN][1000 genomes]
rs4428648	0.81[ASN][1000 genomes]
rs4439099	0.81[ASN][1000 genomes]
rs4442117	0.81[ASN][1000 genomes]
rs4443632	0.81[ASN][1000 genomes]
rs4529440	0.81[ASN][1000 genomes]
rs4604407	0.84[ASN][1000 genomes]
rs4645539	0.81[ASN][1000 genomes]
rs4734196	0.81[ASN][1000 genomes]
rs4734197	0.81[ASN][1000 genomes]
rs4734198	0.81[ASN][1000 genomes]
rs4734209	0.81[ASN][1000 genomes]
rs4734210	0.84[ASN][1000 genomes]
rs4735108	0.81[ASN][1000 genomes]
rs4735109	0.81[ASN][1000 genomes]
rs4735110	0.81[ASN][1000 genomes]
rs4735116	0.82[ASN][1000 genomes]
rs4735118	0.81[ASN][1000 genomes]
rs4735121	0.84[ASN][1000 genomes]
rs4735122	0.84[ASN][1000 genomes]
rs55765942	0.84[ASN][1000 genomes]
rs56896876	0.81[ASN][1000 genomes]
rs6469245	0.82[ASN][1000 genomes]
rs6983376	0.81[ASN][1000 genomes]
rs6985869	0.80[ASN][1000 genomes]
rs6986127	0.81[ASN][1000 genomes]
rs6988041	0.82[ASN][1000 genomes]
rs6990140	0.81[ASN][1000 genomes]
rs7008174	0.84[ASN][1000 genomes]
rs7010380	0.81[ASN][1000 genomes]
rs71526729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs720574	0.82[ASN][1000 genomes]
rs7825689	0.81[ASN][1000 genomes]
rs7845815	0.81[ASN][1000 genomes]
rs922044	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023204	chr8:110169573-110303085	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1031663	chr8:110177432-110303085	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv891272	chr8:110217266-110268104	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv891273	chr8:110219735-110475874	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv891274	chr8:110224047-110308776	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv891275	chr8:110224047-110319234	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110191400-110237400	Weak transcription	Left Ventricle	heart
2	chr8:110204800-110230600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:110211200-110311600	Weak transcription	Right Ventricle	heart
4	chr8:110225600-110231000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:110225800-110241800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:110226000-110230600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:110230000-110230600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
8	chr8:110230000-110230600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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