Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10443262	0.92[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1108801	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11209697	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12022025	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12033260	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12039590	0.84[CHB][hapmap]
rs12046339	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12729410	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs1325950	0.83[ASN][1000 genomes]
rs1327451	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1327460	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1409985	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1536537	0.90[ASN][1000 genomes]
rs1576056	0.84[ASN][1000 genomes]
rs1889599	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2225025	0.92[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2421783	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34289107	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34384777	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4650085	0.83[ASN][1000 genomes]
rs7530345	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7533733	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7540868	0.91[ASN][1000 genomes]
rs871577	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71283400-71286200	Enhancers	Fetal Heart	heart
2	chr1:71283600-71285200	Enhancers	NHDF-Ad	bronchial
3	chr1:71283600-71286200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:71283800-71285000	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr1:71283800-71285200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:71283800-71285200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr1:71284600-71285600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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