Variant report
| Variant | rs1327460 |
|---|---|
| Chromosome Location | chr1:71325044-71325045 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:71323872..71326494-chr1:71327391..71329274,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10443262 | 0.92[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs10889897 | 0.80[JPT][hapmap] |
| rs12039590 | 0.84[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs12729410 | 0.93[CHB][hapmap];0.90[JPT][hapmap] |
| rs1325950 | 0.90[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1327451 | 0.92[ASN][1000 genomes] |
| rs1327453 | 0.91[ASN][1000 genomes] |
| rs1409985 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1536537 | 0.99[ASN][1000 genomes] |
| rs1576056 | 0.93[ASN][1000 genomes] |
| rs2225025 | 0.92[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs7530345 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7533733 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7540868 | 0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1845198 | chr1:71274759-71514969 | Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv830148 | chr1:71310366-71483932 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
