Variant report

Variant	rs13275250
Chromosome Location	chr8:100092857-100092858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:100087357..100089175-chr8:100091437..100093600,2	MCF-7	breast:

Extended variants
information (count: 159 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:140)

rs_ID	r²[population]
rs10091639	0.88[ASN][1000 genomes]
rs10092190	0.95[JPT][hapmap]
rs10094807	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10096925	1.00[JPT][hapmap]
rs10098138	0.81[ASN][1000 genomes]
rs10098153	1.00[JPT][hapmap]
rs10103431	0.99[ASN][1000 genomes]
rs10105136	0.94[ASN][1000 genomes]
rs10107358	0.81[EUR][1000 genomes]
rs10109847	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10112186	0.90[ASN][1000 genomes]
rs10113197	0.96[ASN][1000 genomes]
rs10808361	0.88[ASN][1000 genomes]
rs10808362	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10955192	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10955193	0.95[CEU][hapmap];0.85[AMR][1000 genomes]
rs10955194	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10955195	0.85[ASN][1000 genomes]
rs10955196	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10955204	0.88[ASN][1000 genomes]
rs10955206	0.86[ASN][1000 genomes]
rs11773983	0.80[ASN][1000 genomes]
rs11988987	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11989177	0.88[ASN][1000 genomes]
rs11992517	0.88[ASN][1000 genomes]
rs11994620	0.85[ASN][1000 genomes]
rs12056311	0.81[ASN][1000 genomes]
rs12547301	1.00[JPT][hapmap]
rs12547849	0.95[JPT][hapmap]
rs12549438	0.89[ASN][1000 genomes]
rs12678371	0.94[ASN][1000 genomes]
rs13250430	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13250549	0.96[ASN][1000 genomes]
rs13265237	0.96[ASN][1000 genomes]
rs13271726	0.84[ASN][1000 genomes]
rs13275821	0.99[ASN][1000 genomes]
rs1989645	0.99[ASN][1000 genomes]
rs28479500	0.92[ASN][1000 genomes]
rs28617503	0.83[ASN][1000 genomes]
rs28739504	0.93[ASN][1000 genomes]
rs2922068	0.87[CEU][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap]
rs3019295	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap]
rs34788463	0.86[ASN][1000 genomes]
rs35018432	0.80[ASN][1000 genomes]
rs35974745	0.85[ASN][1000 genomes]
rs3890706	0.81[ASN][1000 genomes]
rs3922710	0.92[ASN][1000 genomes]
rs4132545	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4260868	1.00[JPT][hapmap]
rs4317539	1.00[JPT][hapmap]
rs4366054	0.89[ASN][1000 genomes]
rs4374957	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4380901	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4442113	0.96[CEU][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4489303	1.00[JPT][hapmap]
rs4510823	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4517095	0.95[ASN][1000 genomes]
rs4520132	1.00[JPT][hapmap]
rs4596618	0.99[ASN][1000 genomes]
rs4612311	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4734419	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4734420	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4734426	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4735589	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4735591	0.85[ASN][1000 genomes]
rs4735592	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4735600	0.88[ASN][1000 genomes]
rs4735601	0.88[ASN][1000 genomes]
rs4735603	1.00[JPT][hapmap]
rs4735607	1.00[JPT][hapmap]
rs5019794	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs55893057	0.89[ASN][1000 genomes]
rs58752318	0.86[ASN][1000 genomes]
rs59264629	0.86[ASN][1000 genomes]
rs60042922	0.88[ASN][1000 genomes]
rs6415433	1.00[JPT][hapmap]
rs6468656	0.95[ASN][1000 genomes]
rs6468658	0.93[ASN][1000 genomes]
rs6468660	0.94[ASN][1000 genomes]
rs6468661	0.96[ASN][1000 genomes]
rs6468663	1.00[JPT][hapmap]
rs6468664	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6468665	1.00[JPT][hapmap]
rs6468668	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6468669	1.00[JPT][hapmap]
rs6468670	0.89[ASN][1000 genomes]
rs6468673	0.88[ASN][1000 genomes]
rs6468674	0.83[ASN][1000 genomes]
rs6468676	0.95[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap]
rs6651157	0.95[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6983538	0.82[ASN][1000 genomes]
rs6988226	0.83[ASN][1000 genomes]
rs6989201	1.00[JPT][hapmap]
rs6989751	0.86[ASN][1000 genomes]
rs6990637	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6991283	1.00[JPT][hapmap]
rs6999263	0.95[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs7009650	0.87[ASN][1000 genomes]
rs7010582	0.81[ASN][1000 genomes]
rs7011067	0.88[ASN][1000 genomes]
rs7011752	0.87[ASN][1000 genomes]
rs7012147	0.86[ASN][1000 genomes]
rs7012312	0.98[ASN][1000 genomes]
rs7012513	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7014877	0.83[ASN][1000 genomes]
rs7016304	1.00[JPT][hapmap]
rs72668472	0.84[ASN][1000 genomes]
rs72670298	0.88[ASN][1000 genomes]
rs72670300	0.85[ASN][1000 genomes]
rs734034	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7341678	0.97[ASN][1000 genomes]
rs7459833	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7460625	0.90[ASN][1000 genomes]
rs7461615	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7462457	1.00[JPT][hapmap]
rs7463462	0.89[ASN][1000 genomes]
rs7464318	0.89[ASN][1000 genomes]
rs7464742	0.97[ASN][1000 genomes]
rs7464775	0.97[ASN][1000 genomes]
rs7465566	0.97[ASN][1000 genomes]
rs7816323	0.81[ASN][1000 genomes]
rs7816673	0.95[ASN][1000 genomes]
rs7816843	0.96[ASN][1000 genomes]
rs7817200	0.89[ASN][1000 genomes]
rs7818037	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7824113	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7826207	0.88[ASN][1000 genomes]
rs7829939	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7832772	0.81[ASN][1000 genomes]
rs7835049	0.83[ASN][1000 genomes]
rs7837218	0.88[ASN][1000 genomes]
rs7837669	0.94[ASN][1000 genomes]
rs7837937	0.80[ASN][1000 genomes]
rs7840337	1.00[JPT][hapmap]
rs7842393	1.00[JPT][hapmap]
rs7843899	0.92[ASN][1000 genomes]
rs7844224	0.92[ASN][1000 genomes]
rs9642957	0.91[ASN][1000 genomes]
rs9774546	0.99[ASN][1000 genomes]
rs9792181	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027025	chr8:99672977-100115315	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv539690	chr8:99672977-100115315	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1031089	chr8:99715785-100399935	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv1023227	chr8:99902615-100290948	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv539692	chr8:99902615-100290948	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	esv1803951	chr8:99922754-100191783	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv611809	chr8:99925628-100093510	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv531505	chr8:99932947-100464147	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv1020174	chr8:99978271-100168938	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	nsv539693	chr8:99978271-100168938	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv891221	chr8:100016505-100156391	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	esv2758166	chr8:100028848-100196681	Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	esv2759632	chr8:100028848-100196681	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv524617	chr8:100032844-100717925	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
15	esv1844715	chr8:100046692-100191783	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
16	nsv1020614	chr8:100046692-100594092	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
17	nsv932917	chr8:100074076-100193594	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
18	nsv1026442	chr8:100075230-100561451	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
19	nsv539694	chr8:100075230-100561451	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100051400-100100400	Weak transcription	Osteobl	bone
2	chr8:100066600-100094000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr8:100078200-100103200	Weak transcription	Colon Smooth Muscle	Colon
4	chr8:100084600-100099200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:100084600-100102200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:100084800-100100600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:100085400-100093000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:100088800-100100600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr8:100089800-100101000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr8:100089800-100101400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr8:100089800-100115400	Weak transcription	Left Ventricle	heart
12	chr8:100090000-100095000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr8:100090000-100115000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:100090000-100115400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr8:100090200-100118600	Weak transcription	Primary T cells from cord blood	blood
16	chr8:100090800-100126600	Weak transcription	Fetal Lung	lung
17	chr8:100091200-100115600	Weak transcription	Thymus	Thymus
18	chr8:100091200-100137000	Weak transcription	Pancreas	Pancrea
19	chr8:100091400-100093000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:100091400-100116200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr8:100091600-100099400	Weak transcription	Spleen	Spleen
22	chr8:100091800-100099200	Weak transcription	Fetal Stomach	stomach
23	chr8:100092400-100093200	Flanking Active TSS	GM12878-XiMat	blood
24	chr8:100092600-100093600	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr8:100092800-100093000	Enhancers	Primary B cells from cord blood	blood
26	chr8:100092800-100093400	Enhancers	HepG2	liver
27	chr8:100092800-100093400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr8:100092800-100093600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr8:100092800-100093600	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr8:100092800-100093600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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