Variant report

Variant	rs1327646
Chromosome Location	chr13:51122365-51122366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs201762	0.80[CEU][hapmap]
rs2225226	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2408045	0.81[EUR][1000 genomes]
rs3116599	0.80[CEU][hapmap];0.81[AMR][1000 genomes]
rs3116600	0.81[AMR][1000 genomes]
rs3116601	0.81[AMR][1000 genomes]
rs3116602	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3116603	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3116604	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3116605	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3116606	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3116607	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3116613	0.81[EUR][1000 genomes]
rs3116615	0.81[EUR][1000 genomes]
rs3116616	0.80[EUR][1000 genomes]
rs3116617	0.81[EUR][1000 genomes]
rs3118906	1.00[JPT][hapmap]
rs3118910	0.81[AMR][1000 genomes]
rs3118912	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3118913	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3118914	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3118915	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3118918	0.81[EUR][1000 genomes]
rs3118920	0.81[EUR][1000 genomes]
rs7337757	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9316493	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51117600-51122400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr13:51118000-51122600	Weak transcription	Adipose Nuclei	Adipose
3	chr13:51118000-51123000	Weak transcription	Fetal Muscle Leg	muscle
4	chr13:51120000-51123000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr13:51120000-51126400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr13:51122000-51123000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:51122200-51123000	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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