Variant report

Variant	rs13289574
Chromosome Location	chr9:116106759-116106760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116102720..116107904-chr9:116161009..116164019,5	MCF-7	breast:
2	chr9:116106104..116109704-chr9:116111339..116114258,3	K562	blood:
3	chr9:116091449..116094429-chr9:116104938..116107109,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119411	Chromatin interaction
ENSG00000148218	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10817477	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10981711	0.84[EUR][1000 genomes]
rs10981714	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981718	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981719	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981721	0.91[EUR][1000 genomes]
rs10981725	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981734	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10981736	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10981754	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12350131	0.83[ASN][1000 genomes]
rs12684385	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16932083	0.94[EUR][1000 genomes]
rs16932730	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16932806	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2296075	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2296076	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2418249	0.92[EUR][1000 genomes]
rs28480972	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34289746	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34294772	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34429100	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34749539	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35275471	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35772163	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35852964	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35860025	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35915957	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3810920	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59841233	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61161242	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71503561	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7850003	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1042663	chr9:115920158-116167140	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv893744	chr9:115934852-116170227	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13289574	WDR31	cis	Esophagus Mucosa	GTEx

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116103000-116107200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:116103000-116111800	Weak transcription	Lung	lung
3	chr9:116103200-116107000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr9:116103200-116107200	Weak transcription	Brain Angular Gyrus	brain
5	chr9:116103200-116107400	Weak transcription	Fetal Intestine Large	intestine
6	chr9:116103200-116108000	Enhancers	Fetal Heart	heart
7	chr9:116103200-116108200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr9:116103200-116108600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:116103200-116108800	Weak transcription	Placenta	Placenta
10	chr9:116103200-116110000	Weak transcription	Right Atrium	heart
11	chr9:116103200-116111400	Weak transcription	Stomach Mucosa	stomach
12	chr9:116103200-116111400	Weak transcription	GM12878-XiMat	blood
13	chr9:116104000-116108400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr9:116105400-116108200	Enhancers	Brain Hippocampus Middle	brain
15	chr9:116105400-116108800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr9:116105600-116107600	Enhancers	Colon Smooth Muscle	Colon
17	chr9:116105600-116107800	Enhancers	Primary hematopoietic stem cells	blood
18	chr9:116105600-116107800	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr9:116105600-116107800	Enhancers	Rectal Smooth Muscle	rectum
20	chr9:116105600-116108200	Enhancers	Brain Substantia Nigra	brain
21	chr9:116105800-116106800	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr9:116105800-116107600	Enhancers	Fetal Lung	lung
23	chr9:116105800-116110200	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr9:116105800-116111400	Enhancers	Fetal Intestine Small	intestine
25	chr9:116105800-116111400	Weak transcription	Right Ventricle	heart
26	chr9:116106000-116107200	Weak transcription	Brain Anterior Caudate	brain
27	chr9:116106000-116107200	Weak transcription	Small Intestine	intestine
28	chr9:116106200-116106800	Enhancers	Stomach Smooth Muscle	stomach
29	chr9:116106200-116107600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr9:116106200-116111400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr9:116106400-116107400	Weak transcription	HepG2	liver
32	chr9:116106400-116108800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr9:116106400-116109200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr9:116106400-116110400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr9:116106600-116107000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr9:116106600-116107000	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr9:116106600-116109400	Weak transcription	Colonic Mucosa	Colon
38	chr9:116106600-116110000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr9:116106600-116111400	Weak transcription	Liver	Liver
40	chr9:116106600-116111400	Weak transcription	Esophagus	oesophagus
41	chr9:116106600-116111400	Weak transcription	Pancreas	Pancrea
42	chr9:116106600-116111800	Weak transcription	K562	blood

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