Variant report

Variant	rs1329252
Chromosome Location	chr10:25791843-25791844
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25781301..25783686-chr10:25790509..25792749,2	K562	blood:
2	chr10:25785235..25786972-chr10:25790311..25792044,2	K562	blood:
3	chr10:25788785..25792854-chr10:25793449..25797188,3	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10047266	0.89[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10508699	0.95[CHB][hapmap];0.98[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs10741093	0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10764556	0.96[ASN][1000 genomes]
rs10828810	0.86[JPT][hapmap]
rs10828815	0.81[JPT][hapmap]
rs10828816	0.96[ASN][1000 genomes]
rs10828817	0.96[ASN][1000 genomes]
rs11014580	0.86[JPT][hapmap]
rs11014581	0.91[JPT][hapmap]
rs11014595	0.96[ASN][1000 genomes]
rs12221280	0.84[JPT][hapmap]
rs1335208	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs1335209	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs1536836	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs1536837	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs1887925	0.86[JPT][hapmap]
rs1932148	0.80[JPT][hapmap]
rs1932149	0.81[JPT][hapmap]
rs1932150	0.81[JPT][hapmap]
rs3923088	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4459183	0.81[JPT][hapmap]
rs4474349	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4623781	0.81[JPT][hapmap]
rs4749042	0.81[JPT][hapmap]
rs4749043	0.81[JPT][hapmap]
rs5001528	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6482488	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6482489	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6482490	0.92[ASN][1000 genomes]
rs7077800	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs7080715	0.92[ASN][1000 genomes]
rs7080997	0.92[ASN][1000 genomes]
rs7082952	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7084736	0.96[ASN][1000 genomes]
rs7086249	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs7096556	0.92[ASN][1000 genomes]
rs7097106	0.92[ASN][1000 genomes]
rs7097224	0.84[ASN][1000 genomes]
rs7097392	0.92[ASN][1000 genomes]
rs7100942	0.91[CHB][hapmap];0.98[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs7478285	0.92[CEU][hapmap];0.91[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs943984	0.86[JPT][hapmap]
rs943985	0.81[AMR][1000 genomes]
rs952600	0.96[ASN][1000 genomes]
rs962696	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1329252	GPR158	cis	parietal	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25782400-25792200	Weak transcription	Brain Anterior Caudate	brain
2	chr10:25783200-25797200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:25788400-25792000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:25790400-25792000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:25790400-25792800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr10:25790600-25792600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:25791200-25792000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr10:25791200-25792000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr10:25791200-25792600	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr10:25791200-25792800	Enhancers	Adipose Nuclei	Adipose
11	chr10:25791600-25794600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:25791600-25800400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr10:25791800-25792200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr10:25791800-25794600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:25791800-25794800	Weak transcription	Fetal Heart	heart
16	chr10:25791800-25796800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr10:25791800-25796800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr10:25791800-25797200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr10:25791800-25797200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:25791800-25797200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr10:25791800-25797200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr10:25791800-25797200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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