Variant report

Variant	rs13293185
Chromosome Location	chr3:9307408-9307409
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1009617	0.82[ASN][1000 genomes]
rs10511966	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10867682	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10867766	0.82[EUR][1000 genomes]
rs10867768	0.83[EUR][1000 genomes]
rs11138902	0.92[ASN][1000 genomes]
rs11139065	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11139155	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11139224	0.85[EUR][1000 genomes]
rs11139228	0.85[EUR][1000 genomes]
rs11139236	0.84[EUR][1000 genomes]
rs11139245	0.84[EUR][1000 genomes]
rs11139246	0.84[EUR][1000 genomes]
rs11139274	0.84[EUR][1000 genomes]
rs11139279	0.84[EUR][1000 genomes]
rs11139289	0.83[EUR][1000 genomes]
rs11139293	0.83[EUR][1000 genomes]
rs11139294	0.83[EUR][1000 genomes]
rs11139299	0.83[EUR][1000 genomes]
rs1228285	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1236984	0.84[EUR][1000 genomes]
rs1237679	0.82[ASN][1000 genomes]
rs12378318	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12553491	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13283450	0.83[EUR][1000 genomes]
rs13286303	0.82[EUR][1000 genomes]
rs13286400	0.85[EUR][1000 genomes]
rs13287758	0.84[EUR][1000 genomes]
rs13289730	0.84[EUR][1000 genomes]
rs13290847	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13291843	0.84[EUR][1000 genomes]
rs13302431	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1330326	0.83[EUR][1000 genomes]
rs1330331	0.83[EUR][1000 genomes]
rs1331978	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1475641	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1619631	0.82[ASN][1000 genomes]
rs1631780	0.82[ASN][1000 genomes]
rs1757955	0.82[ASN][1000 genomes]
rs1761286	0.82[ASN][1000 genomes]
rs1761287	0.83[ASN][1000 genomes]
rs1854701	0.83[EUR][1000 genomes]
rs1889400	0.82[ASN][1000 genomes]
rs2297420	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2777861	0.82[ASN][1000 genomes]
rs2777864	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2781537	0.81[ASN][1000 genomes]
rs2781539	0.82[ASN][1000 genomes]
rs2781540	0.83[ASN][1000 genomes]
rs2781541	0.82[ASN][1000 genomes]
rs35631039	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3897757	0.81[ASN][1000 genomes]
rs4744899	0.81[ASN][1000 genomes]
rs7025896	0.84[EUR][1000 genomes]
rs7871891	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002551	chr3:9041119-9631239	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv536483	chr3:9041119-9631239	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
3	nsv1004942	chr3:9078598-9829303	Genic enhancers Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
4	nsv536484	chr3:9078598-9829303	Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
5	nsv916784	chr3:9183987-9835666	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
6	nsv529442	chr3:9263494-9768705	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	133 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:9302600-9321400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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