Variant report

Variant	rs1329927
Chromosome Location	chr9:18020566-18020567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10511648	0.90[ASN][1000 genomes]
rs10511649	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10810885	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810886	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10963398	0.83[EUR][1000 genomes]
rs10963399	0.81[EUR][1000 genomes]
rs10963403	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10963414	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10963415	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10963416	0.96[ASN][1000 genomes]
rs10963418	0.93[ASN][1000 genomes]
rs10963431	0.93[ASN][1000 genomes]
rs12156463	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12341372	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12346224	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12347884	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12350936	0.93[ASN][1000 genomes]
rs12376842	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1329919	0.93[ASN][1000 genomes]
rs34384948	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67660830	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7350308	0.80[ASN][1000 genomes]
rs947923	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9987690	0.86[ASN][1000 genomes]
rs9987691	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9987764	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1021862	chr9:17931213-18052101	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2752288	chr9:17965723-18036892	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18016400-18022000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:18018800-18022000	Weak transcription	Aorta	Aorta
3	chr9:18019000-18021000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:18019200-18022000	Weak transcription	Liver	Liver

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