Variant report

Variant	rs1330149
Chromosome Location	chr9:110545574-110545575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10117695	0.80[AFR][1000 genomes]
rs10118587	0.91[AFR][1000 genomes]
rs10512380	0.95[CEU][hapmap];0.90[TSI][hapmap];0.94[EUR][1000 genomes]
rs10759258	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10816568	0.94[EUR][1000 genomes]
rs10816569	0.90[CEU][hapmap];0.94[EUR][1000 genomes]
rs10979040	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12337757	0.80[AFR][1000 genomes]
rs12339291	0.80[AFR][1000 genomes]
rs12343121	0.80[AFR][1000 genomes]
rs12347133	0.80[AFR][1000 genomes]
rs1411357	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1467311	0.91[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17625771	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs1831382	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1970014	0.83[ASN][1000 genomes]
rs2104759	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2140480	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2140483	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28376933	0.80[AFR][1000 genomes]
rs28399092	0.91[AFR][1000 genomes]
rs28784969	0.80[AFR][1000 genomes]
rs4979370	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57874597	0.80[AFR][1000 genomes]
rs7040755	0.95[EUR][1000 genomes]
rs7860653	0.86[MKK][hapmap]
rs944172	0.89[CHB][hapmap];0.89[CHD][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110536600-110546600	Weak transcription	Spleen	Spleen
2	chr9:110541400-110547400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:110542000-110547400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr9:110543600-110547800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:110544200-110546000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr9:110544200-110548000	Enhancers	Fetal Muscle Leg	muscle
7	chr9:110544200-110549200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:110544600-110545800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:110544600-110546000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr9:110544600-110546200	Enhancers	K562	blood
11	chr9:110544800-110546000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:110544800-110547800	Enhancers	Fetal Intestine Large	intestine
13	chr9:110544800-110549200	Enhancers	Placenta	Placenta
14	chr9:110545000-110545800	Enhancers	Primary hematopoietic stem cells	blood
15	chr9:110545000-110545800	Enhancers	NHDF-Ad	bronchial
16	chr9:110545000-110546600	Weak transcription	Left Ventricle	heart
17	chr9:110545200-110546400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr9:110545200-110546400	Weak transcription	Osteobl	bone
19	chr9:110545200-110546600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:110545200-110546600	Weak transcription	HSMM	muscle
21	chr9:110545200-110546600	Weak transcription	HSMMtube	muscle
22	chr9:110545200-110547400	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr9:110545400-110546400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:110545400-110546600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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