Variant report

Variant	rs13301883
Chromosome Location	chr9:17811310-17811311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:33352554..33353197-chr9:17810608..17811353,2	MCF-7	breast:
2	chr9:17810623..17811776-chr9:18207859..18208526,4	MCF-7	breast:
3	chr9:17811052..17811931-chr9:18212974..18213863,4	MCF-7	breast:
4	chr9:17810712..17811652-chr9:18207926..18208828,3	MCF-7	breast:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1536068	1.00[JPT][hapmap]
rs17454653	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs34954743	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35187055	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35926114	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3808663	0.87[EUR][1000 genomes]
rs3808668	1.00[JPT][hapmap]
rs3808669	1.00[JPT][hapmap]
rs3808676	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3808678	1.00[JPT][hapmap]
rs3824371	1.00[JPT][hapmap]
rs61646773	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71504872	0.93[EUR][1000 genomes]
rs71504873	0.93[EUR][1000 genomes]
rs71504874	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7860719	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9406697	1.00[JPT][hapmap]
rs9406699	1.00[JPT][hapmap]
rs9406700	1.00[JPT][hapmap]
rs9406702	1.00[JPT][hapmap]
rs9406703	1.00[JPT][hapmap]
rs9406704	1.00[JPT][hapmap]
rs9406706	1.00[JPT][hapmap]
rs9406707	1.00[JPT][hapmap]
rs9406708	1.00[JPT][hapmap]
rs9406709	1.00[JPT][hapmap]
rs9406712	1.00[JPT][hapmap]
rs9406714	1.00[JPT][hapmap]
rs9406717	1.00[JPT][hapmap]
rs9406719	1.00[JPT][hapmap]
rs9406720	1.00[JPT][hapmap]
rs9406723	1.00[JPT][hapmap]
rs9406724	1.00[JPT][hapmap]
rs9406725	1.00[JPT][hapmap]
rs9406726	1.00[JPT][hapmap]
rs9406727	1.00[JPT][hapmap]
rs9406731	1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs9406732	0.87[EUR][1000 genomes]
rs9406733	0.87[EUR][1000 genomes]
rs9406737	1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs9407837	1.00[JPT][hapmap]
rs9407838	1.00[JPT][hapmap]
rs9407839	1.00[JPT][hapmap]
rs9407849	1.00[JPT][hapmap]
rs9407850	1.00[JPT][hapmap]
rs9407851	1.00[JPT][hapmap]
rs9407852	1.00[JPT][hapmap]
rs9407854	1.00[JPT][hapmap]
rs9407855	1.00[JPT][hapmap]
rs9407856	1.00[JPT][hapmap]
rs9407857	1.00[JPT][hapmap]
rs9407859	1.00[JPT][hapmap]
rs9407860	1.00[JPT][hapmap]
rs9407861	1.00[JPT][hapmap]
rs9407862	1.00[JPT][hapmap]
rs9407863	1.00[JPT][hapmap]
rs9407864	1.00[JPT][hapmap]
rs9407865	1.00[JPT][hapmap]
rs9407866	1.00[JPT][hapmap]
rs9407867	1.00[JPT][hapmap]
rs9407869	1.00[JPT][hapmap]
rs9407870	1.00[JPT][hapmap]
rs9407877	1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs9407878	1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs9407879	1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs9407880	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs9407881	1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs9407882	1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs9407883	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1034673	chr9:17739006-17916606	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1023089	chr9:17748811-17919574	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv824867	chr9:17810486-17828870	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv8422	chr9:17810758-17829560	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2761507	chr9:17810983-17901307	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17796000-17812000	Weak transcription	Aorta	Aorta
2	chr9:17808400-17812000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:17810600-17811800	Enhancers	Hela-S3	cervix
4	chr9:17810600-17812600	Enhancers	Fetal Brain Male	brain
5	chr9:17810800-17812400	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr9:17811000-17812800	Enhancers	Fetal Lung	lung
7	chr9:17811200-17811800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:17811200-17811800	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr9:17811200-17812400	Weak transcription	Fetal Brain Female	brain
10	chr9:17811200-17814200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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