Variant report

Variant	rs1330328
Chromosome Location	chr9:72163162-72163163
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72038579..72040872-chr9:72161729..72164338,3	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10481750	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10780507	0.87[ASN][1000 genomes]
rs10867730	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10867757	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11139084	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11139269	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1330327	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330330	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2285080	0.95[ASN][1000 genomes]
rs4744908	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6559625	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6559626	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7019109	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7025471	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7033083	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7044971	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7046404	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7851858	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7858003	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7865302	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1047593	chr9:71971536-72180583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1035633	chr9:71995963-72176984	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1048650	chr9:72028458-72179847	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1039966	chr9:72057304-72181564	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72158200-72163800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr9:72158400-72164200	Weak transcription	Left Ventricle	heart
3	chr9:72158600-72163200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:72158600-72163600	Weak transcription	Brain Angular Gyrus	brain
5	chr9:72158800-72163200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:72158800-72163400	Weak transcription	Brain Anterior Caudate	brain
7	chr9:72158800-72163400	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:72158800-72163400	Weak transcription	Brain Substantia Nigra	brain
9	chr9:72158800-72164200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr9:72158800-72164200	Weak transcription	Liver	Liver
11	chr9:72158800-72166000	Weak transcription	Fetal Heart	heart
12	chr9:72159200-72163600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr9:72161400-72163200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr9:72161800-72163600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:72162200-72163600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr9:72163000-72163200	ZNF genes & repeats	Aorta	Aorta
17	chr9:72163000-72164400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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