Variant report

Variant	rs13314208
Chromosome Location	chr3:81987280-81987281
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:81984085..81985677-chr3:81985757..81987319,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10433514	0.85[EUR][1000 genomes]
rs13314900	0.82[CHB][hapmap]
rs13325804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13326960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28698455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28815840	0.82[EUR][1000 genomes]
rs34665337	0.81[ASN][1000 genomes]
rs4073255	0.83[EUR][1000 genomes]
rs4280658	0.83[EUR][1000 genomes]
rs4465964	0.81[EUR][1000 genomes]
rs56911786	0.83[EUR][1000 genomes]
rs58381411	0.83[EUR][1000 genomes]
rs58400916	0.82[EUR][1000 genomes]
rs58807347	0.83[EUR][1000 genomes]
rs62265686	0.81[ASN][1000 genomes]
rs62265712	0.94[ASN][1000 genomes]
rs66764013	0.83[EUR][1000 genomes]
rs67953383	0.83[EUR][1000 genomes]
rs7635249	0.81[EUR][1000 genomes]
rs7636208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7637713	0.81[EUR][1000 genomes]
rs7644264	0.83[EUR][1000 genomes]
rs7644824	0.83[EUR][1000 genomes]
rs7645838	0.82[YRI][hapmap]
rs7646645	0.81[EUR][1000 genomes]
rs7649233	0.82[EUR][1000 genomes]
rs9813371	0.82[CHB][hapmap]
rs9814843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817940	0.83[EUR][1000 genomes]
rs9818589	0.83[EUR][1000 genomes]
rs9834349	0.82[EUR][1000 genomes]
rs9859620	0.94[ASN][1000 genomes]
rs9865893	0.94[ASN][1000 genomes]
rs9871195	0.82[EUR][1000 genomes]
rs9871912	0.83[EUR][1000 genomes]
rs9872129	0.82[EUR][1000 genomes]
rs9872204	0.82[EUR][1000 genomes]
rs9872449	0.82[EUR][1000 genomes]
rs9875335	0.94[ASN][1000 genomes]
rs9877352	0.82[EUR][1000 genomes]
rs9877471	0.81[EUR][1000 genomes]
rs9882124	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81984000-81990600	Weak transcription	Psoas Muscle	Psoas
2	chr3:81985200-81988000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:81985400-81988000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:81986600-81987800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr3:81986600-81988000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:81986600-81988200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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