Variant report

Variant	rs13322528
Chromosome Location	chr3:142829423-142829424
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr3:142829280-142829430	GM12872	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000243733	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1107771	0.86[EUR][1000 genomes]
rs12107010	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13321817	0.87[EUR][1000 genomes]
rs13322379	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13325630	0.86[EUR][1000 genomes]
rs16852899	1.00[CEU][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes]
rs16852993	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs3821646	0.86[EUR][1000 genomes]
rs58531834	0.86[EUR][1000 genomes]
rs59540153	0.86[EUR][1000 genomes]
rs6764683	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6768278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6771415	1.00[CEU][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes]
rs6782124	0.86[EUR][1000 genomes]
rs6797880	0.86[EUR][1000 genomes]
rs6805721	0.86[EUR][1000 genomes]
rs6806835	0.86[EUR][1000 genomes]
rs72990813	0.86[EUR][1000 genomes]
rs72992541	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72992555	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7646915	0.86[EUR][1000 genomes]
rs9289653	1.00[CEU][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes]
rs9808897	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9808965	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9839114	0.86[EUR][1000 genomes]
rs9842812	0.86[EUR][1000 genomes]
rs9868064	0.86[EUR][1000 genomes]
rs9871843	0.86[EUR][1000 genomes]
rs9876889	0.86[EUR][1000 genomes]
rs9877143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9881229	1.00[CEU][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes]
rs9881390	0.86[EUR][1000 genomes]
rs9882184	0.86[EUR][1000 genomes]
rs9883936	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9990198	1.00[CEU][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv2757893	chr3:142720230-142962932	Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2759183	chr3:142720230-142964373	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv591921	chr3:142762487-142841740	Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142828800-142829800	Enhancers	Fetal Brain Female	brain
2	chr3:142829400-142829600	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links