Variant report

Variant	rs13324817
Chromosome Location	chr3:142338751-142338752
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:142337305..142339939-chr3:142351079..142353328,2	K562	blood:
2	chr3:142336507..142339486-chr3:142355322..142357574,2	MCF-7	breast:
3	chr3:142338028..142339583-chr3:142381758..142384613,2	MCF-7	breast:
4	chr3:142336924..142339246-chr3:142443118..142445487,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144935	Chromatin interaction
ENSG00000120756	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1479135	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16852314	0.86[ASN][1000 genomes]
rs28539899	1.00[ASN][1000 genomes]
rs55764539	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56921402	1.00[ASN][1000 genomes]
rs57014591	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57792207	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61300208	1.00[ASN][1000 genomes]
rs6765659	1.00[ASN][1000 genomes]
rs6768692	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6775426	1.00[ASN][1000 genomes]
rs6778183	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6783167	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73002081	1.00[ASN][1000 genomes]
rs73002088	1.00[ASN][1000 genomes]
rs73002089	1.00[ASN][1000 genomes]
rs73002093	1.00[ASN][1000 genomes]
rs73864409	1.00[ASN][1000 genomes]
rs7431811	1.00[ASN][1000 genomes]
rs7620319	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7623858	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7628187	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7630817	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7634495	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7648475	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9815050	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9821817	1.00[ASN][1000 genomes]
rs9824559	1.00[ASN][1000 genomes]
rs9829403	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9832315	1.00[ASN][1000 genomes]
rs9835086	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9837730	1.00[JPT][hapmap]
rs9846817	1.00[ASN][1000 genomes]
rs9867946	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877560	chr3:142132749-142362179	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv932989	chr3:142204208-142423305	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142334000-142357200	Weak transcription	Pancreas	Pancrea
2	chr3:142336000-142339400	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr3:142336000-142340800	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr3:142337200-142338800	Flanking Active TSS	A549	lung
5	chr3:142337600-142339000	Enhancers	NHEK	skin
6	chr3:142337600-142340600	Weak transcription	Small Intestine	intestine
7	chr3:142337800-142348400	Weak transcription	Gastric	stomach
8	chr3:142338000-142339800	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr3:142338000-142340600	Weak transcription	Fetal Intestine Large	intestine
10	chr3:142338000-142340600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr3:142338000-142340800	Enhancers	Stomach Mucosa	stomach
12	chr3:142338000-142344200	Weak transcription	Colonic Mucosa	Colon
13	chr3:142338200-142339000	Enhancers	K562	blood
14	chr3:142338400-142339400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr3:142338400-142340600	Weak transcription	Fetal Intestine Small	intestine
16	chr3:142338400-142341800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:142338600-142343800	Weak transcription	HSMMtube	muscle

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