Variant report

Variant	rs13330157
Chromosome Location	chr16:80231851-80231852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80217075..80218900-chr16:80231657..80233649,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73573902	1.00[AMR][1000 genomes]
rs73577625	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577643	0.83[AFR][1000 genomes]
rs9889095	0.83[AFR][1000 genomes]
rs9927166	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055228	chr16:80207546-80378842	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1061068	chr16:80207546-80537052	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1064093	chr16:80208443-80333301	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv542985	chr16:80208443-80333301	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1059997	chr16:80209367-80247050	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1063466	chr16:80227628-80360463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv3450239	chr16:80229851-80232449	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv906996	chr16:80230224-80334010	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80223400-80232200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr16:80231400-80233000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr16:80231400-80233000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr16:80231400-80233200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr16:80231400-80233200	Flanking Active TSS	A549	lung
6	chr16:80231400-80233200	Enhancers	HSMM	muscle
7	chr16:80231400-80233200	Enhancers	HUVEC	blood vessel
8	chr16:80231400-80233200	Enhancers	NHDF-Ad	bronchial
9	chr16:80231400-80233400	Enhancers	Osteobl	bone
10	chr16:80231400-80233600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr16:80231600-80232000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr16:80231600-80232000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr16:80231600-80232000	Enhancers	Colon Smooth Muscle	Colon
14	chr16:80231600-80232000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr16:80231600-80232000	Enhancers	Fetal Muscle Leg	muscle
16	chr16:80231600-80232000	Flanking Active TSS	Hela-S3	cervix
17	chr16:80231600-80232400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr16:80231600-80232400	Enhancers	Fetal Stomach	stomach
19	chr16:80231600-80232400	Enhancers	HSMMtube	muscle
20	chr16:80231600-80232600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr16:80231600-80233000	Enhancers	Brain Germinal Matrix	brain
22	chr16:80231600-80233200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr16:80231600-80233200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr16:80231600-80233200	Enhancers	Fetal Lung	lung
25	chr16:80231600-80233200	Enhancers	HepG2	liver
26	chr16:80231800-80232000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr16:80231800-80232000	Enhancers	Muscle Satellite Cultured Cells	--
28	chr16:80231800-80232000	Enhancers	HMEC	breast
29	chr16:80231800-80232000	Enhancers	NH-A	brain
30	chr16:80231800-80232000	Enhancers	NHEK	skin
31	chr16:80231800-80232200	Active TSS	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links