Variant report

Variant	rs13331960
Chromosome Location	chr16:80220277-80220278
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11150251	1.00[AMR][1000 genomes]
rs12934434	1.00[AMR][1000 genomes]
rs13330289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13330955	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13339027	1.00[AMR][1000 genomes]
rs16952569	0.82[AFR][1000 genomes]
rs28630847	1.00[AMR][1000 genomes]
rs28829271	1.00[AMR][1000 genomes]
rs57172347	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58089953	1.00[AMR][1000 genomes]
rs58986982	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6564746	1.00[AMR][1000 genomes]
rs6564747	1.00[AMR][1000 genomes]
rs7204613	1.00[AMR][1000 genomes]
rs73573837	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573839	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573843	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73577643	1.00[AMR][1000 genomes]
rs73579646	1.00[AMR][1000 genomes]
rs73579647	1.00[AMR][1000 genomes]
rs73579651	1.00[AMR][1000 genomes]
rs73579655	1.00[AMR][1000 genomes]
rs74030061	1.00[AMR][1000 genomes]
rs8061220	1.00[AMR][1000 genomes]
rs9889095	1.00[AMR][1000 genomes]
rs9921104	1.00[AMR][1000 genomes]
rs9922244	1.00[AMR][1000 genomes]
rs9922479	1.00[AMR][1000 genomes]
rs9925651	1.00[AMR][1000 genomes]
rs9926298	1.00[AMR][1000 genomes]
rs9927166	1.00[AMR][1000 genomes]
rs9927513	1.00[AMR][1000 genomes]
rs9928544	1.00[AMR][1000 genomes]
rs9931668	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9934444	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9938466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9938741	1.00[AMR][1000 genomes]
rs9938944	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055228	chr16:80207546-80378842	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1061068	chr16:80207546-80537052	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1064093	chr16:80208443-80333301	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv542985	chr16:80208443-80333301	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1059997	chr16:80209367-80247050	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80210400-80231400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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