Variant report

Variant	rs13343936
Chromosome Location	chr19:42986907-42986908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10084159	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10401271	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10402361	0.82[AMR][1000 genomes]
rs10402677	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10403517	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10405445	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10405646	0.84[AMR][1000 genomes]
rs10405906	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10407576	0.83[AMR][1000 genomes]
rs10412463	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10413413	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10416089	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10419378	0.83[AMR][1000 genomes]
rs10420796	0.84[AMR][1000 genomes]
rs10421108	0.83[AMR][1000 genomes]
rs10422987	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10469271	0.84[AMR][1000 genomes]
rs10469284	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10469286	0.84[AMR][1000 genomes]
rs1076243	0.82[AMR][1000 genomes]
rs11083659	0.83[AMR][1000 genomes]
rs11665870	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11665935	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11666350	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11666835	0.84[AMR][1000 genomes]
rs11666862	0.84[AMR][1000 genomes]
rs11668599	0.93[ASN][1000 genomes]
rs11671272	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11881517	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12611218	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16975789	0.97[ASN][1000 genomes]
rs16975865	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28411988	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4080606	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55850134	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6509016	0.82[AFR][1000 genomes]
rs7248297	0.83[AMR][1000 genomes]
rs7253056	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7253209	0.83[AMR][1000 genomes]
rs8102439	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8103285	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs8103891	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8106570	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs8107152	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs8107254	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8107790	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8112156	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs851302	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9304604	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42979400-42990800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr19:42981200-43002000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr19:42981400-42993000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr19:42985200-42988400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr19:42985200-42993000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr19:42985800-42988400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr19:42986000-42989600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr19:42986000-42990400	Weak transcription	Adipose Nuclei	Adipose
9	chr19:42986000-42999400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr19:42986200-42987800	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr19:42986200-42990000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr19:42986600-42987600	Weak transcription	HepG2	liver
13	chr19:42986600-42998200	Weak transcription	Liver	Liver

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