Variant report

Variant	rs13346272
Chromosome Location	chr19:36749268-36749269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10402614	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10402631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10402836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28890289	0.84[AFR][1000 genomes]
rs59682270	0.95[AFR][1000 genomes]
rs60865794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73614262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8104664	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520020	chr19:36721368-36822594	Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv9715	chr19:36729688-36811749	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1063208	chr19:36743461-36847486	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv961212	chr19:36744378-36801298	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv960831	chr19:36744378-36813769	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36739600-36756800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr19:36745800-36750600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr19:36746200-36749400	ZNF genes & repeats	Fetal Stomach	stomach
4	chr19:36747000-36750000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr19:36747600-36749400	ZNF genes & repeats	Lung	lung
6	chr19:36747800-36749400	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr19:36747800-36749400	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr19:36747800-36749400	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr19:36747800-36749600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
10	chr19:36747800-36749600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr19:36747800-36749600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
12	chr19:36747800-36749800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr19:36747800-36749800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr19:36748000-36749600	ZNF genes & repeats	Liver	Liver
15	chr19:36748000-36749600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
16	chr19:36748200-36749400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr19:36748200-36749400	Active TSS	Brain Germinal Matrix	brain
18	chr19:36748800-36749400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
19	chr19:36748800-36762800	Weak transcription	Right Atrium	heart
20	chr19:36749000-36749400	Flanking Active TSS	Brain Anterior Caudate	brain
21	chr19:36749000-36749400	Flanking Active TSS	Brain Cingulate Gyrus	brain
22	chr19:36749000-36749400	Enhancers	Ovary	ovary
23	chr19:36749000-36749400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr19:36749000-36749600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr19:36749200-36749400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr19:36749200-36749400	Enhancers	Adipose Nuclei	Adipose
27	chr19:36749200-36749400	Active TSS	Brain Angular Gyrus	brain
28	chr19:36749200-36749400	Flanking Active TSS	Brain Hippocampus Middle	brain
29	chr19:36749200-36749600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr19:36749200-36749600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr19:36749200-36749600	ZNF genes & repeats	Fetal Brain Female	brain
32	chr19:36749200-36762800	Weak transcription	Colon Smooth Muscle	Colon
33	chr19:36749200-36764800	Weak transcription	Brain Substantia Nigra	brain

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