Variant report

Variant	rs1335033
Chromosome Location	chr6:102489410-102489411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:102368803..102370851-chr6:102488591..102491392,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1223042	0.82[CHB][hapmap]
rs13191478	0.81[JPT][hapmap]
rs13195038	0.81[JPT][hapmap]
rs13199079	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs13200524	0.81[JPT][hapmap]
rs13203156	0.81[JPT][hapmap]
rs13208276	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs13218403	0.81[JPT][hapmap]
rs1335022	0.81[JPT][hapmap]
rs1335024	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1335029	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1335031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs1335032	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1413965	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap]
rs2023599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2399584	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs2518146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2518148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2518150	0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap]
rs2782908	0.82[CHB][hapmap]
rs2782916	1.00[CEU][hapmap]
rs2782917	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2782920	0.85[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.87[TSI][hapmap]
rs2782922	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2782929	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs2852607	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs2852608	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap]
rs2852610	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2852611	0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs2852612	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7738614	0.81[JPT][hapmap]
rs7749722	0.81[JPT][hapmap]
rs7756449	0.81[JPT][hapmap]
rs9485585	0.81[JPT][hapmap]
rs9498801	0.81[JPT][hapmap]
rs966953	0.82[CHB][hapmap]
rs995639	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs995640	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830744	chr6:102369761-102566737	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1022069	chr6:102470600-102598244	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv529294	chr6:102474505-103122745	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1335033	SFRS18	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102487600-102491200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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