Variant report

Variant	rs13353799
Chromosome Location	chr4:143550482-143550483
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143540499..143543272-chr4:143549773..143551705,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10000770	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10006418	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10015404	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10020322	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10020865	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11723318	0.84[ASN][1000 genomes]
rs11732693	0.86[AMR][1000 genomes]
rs13103597	0.94[AMR][1000 genomes]
rs13114437	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13122722	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13137056	0.84[ASN][1000 genomes]
rs13141068	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1348362	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1348363	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17016550	1.00[JPT][hapmap]
rs28415364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28485272	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28673920	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28733118	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28758601	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34082059	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34234953	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34393544	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34626802	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34699252	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35255414	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35366693	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36101393	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36142547	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60361448	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62330251	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62331862	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6834451	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6849164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6856817	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs967462	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143537000-143575800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143548000-143556400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:143548800-143552200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:143549800-143551400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:143550200-143552000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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