Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11738876	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11745914	0.82[EUR][1000 genomes]
rs11957758	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12513398	0.84[EUR][1000 genomes]
rs12652566	0.85[EUR][1000 genomes]
rs13359215	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1350022	0.86[EUR][1000 genomes]
rs1378444	0.85[EUR][1000 genomes]
rs1455429	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1455430	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17165848	0.86[EUR][1000 genomes]
rs17165849	0.86[EUR][1000 genomes]
rs2061115	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2198680	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35774032	0.84[EUR][1000 genomes]
rs4538635	0.85[EUR][1000 genomes]
rs60805392	0.84[EUR][1000 genomes]
rs62366857	0.86[EUR][1000 genomes]
rs6876270	0.85[EUR][1000 genomes]
rs6889185	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6898721	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv1831511	chr5:97666860-97678414	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97660000-97669800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:97663800-97669600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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