Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10035750	0.81[AMR][1000 genomes]
rs10043946	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10055017	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10055652	0.89[AMR][1000 genomes]
rs10064138	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10065021	0.81[AMR][1000 genomes]
rs10068083	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10069511	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1035960	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10515650	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10515651	0.81[AMR][1000 genomes]
rs13356620	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1422927	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17112860	1.00[EUR][1000 genomes]
rs17112916	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17112920	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17112975	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1833760	1.00[EUR][1000 genomes]
rs1946487	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2034583	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28478867	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28649615	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151641600-151643000	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
2	chr5:151641600-151643000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:151641600-151643200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr5:151641800-151642800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr5:151641800-151643000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
6	chr5:151642400-151642800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
7	chr5:151642400-151642800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:151642400-151642800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:151642400-151642800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:151642400-151642800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
11	chr5:151642400-151642800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:151642400-151643000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
13	chr5:151642400-151643000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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