Variant report

Variant	rs13357890
Chromosome Location	chr5:112512196-112512197
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112509608..112512785-chr5:112516930..112518881,3	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10037994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10053937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10066822	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs11241194	1.00[CEU][hapmap]
rs13357974	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13359897	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1373214	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1373215	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17135359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17135403	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[EUR][1000 genomes]
rs17135404	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1867322	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1867323	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2416307	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6897992	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7732695	1.00[CEU][hapmap]
rs7737490	1.00[CEU][hapmap]
rs935160	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112500800-112513800	Weak transcription	Lung	lung
2	chr5:112500800-112518400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:112503000-112513600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:112503200-112514000	Weak transcription	Fetal Stomach	stomach
5	chr5:112503800-112514800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:112504400-112512600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:112504800-112525600	Weak transcription	Esophagus	oesophagus
8	chr5:112505800-112521400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:112506200-112518200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:112506400-112521600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:112507000-112526000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:112507400-112512200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:112507400-112512200	Weak transcription	Psoas Muscle	Psoas
14	chr5:112507800-112512200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr5:112509800-112513800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:112509800-112513800	Weak transcription	Fetal Kidney	kidney
17	chr5:112510600-112513600	Enhancers	Fetal Heart	heart
18	chr5:112511200-112512200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr5:112511600-112513000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:112511800-112512600	Enhancers	Ovary	ovary
21	chr5:112512000-112512200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr5:112512000-112512200	Enhancers	Fetal Lung	lung
23	chr5:112512000-112512600	Enhancers	Adipose Nuclei	Adipose
24	chr5:112512000-112512600	Enhancers	Brain Angular Gyrus	brain
25	chr5:112512000-112512600	Enhancers	Fetal Muscle Leg	muscle
26	chr5:112512000-112513000	Strong transcription	NHEK	skin
27	chr5:112512000-112514200	Enhancers	Right Atrium	heart
28	chr5:112512000-112515600	Enhancers	Liver	Liver
29	chr5:112512000-112515800	Enhancers	Left Ventricle	heart
30	chr5:112512000-112516200	Enhancers	Right Ventricle	heart

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