Variant report

Variant	rs13358776
Chromosome Location	chr5:61557693-61557694
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:61555924..61558214-chr5:61579881..61582380,2	K562	blood:
2	chr5:61556788..61560229-chr5:61600730..61603459,3	MCF-7	breast:
3	chr5:61557476..61560441-chr5:61562160..61565169,3	MCF-7	breast:
4	chr5:61555834..61558737-chr5:61608990..61611037,2	MCF-7	breast:
5	chr5:61556303..61559111-chr5:61600439..61603890,5	K562	blood:
6	chr5:61551611..61555704-chr5:61555776..61558862,4	K562	blood:
7	chr5:61556705..61559292-chr5:61600542..61603890,7	K562	blood:

Variant related genes	Relation type
ENSG00000068796	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10038739	0.85[ASN][1000 genomes]
rs10051806	0.85[ASN][1000 genomes]
rs10052005	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10056974	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10061970	1.00[ASN][1000 genomes]
rs10471273	0.85[ASN][1000 genomes]
rs10471539	0.85[ASN][1000 genomes]
rs10471541	0.85[ASN][1000 genomes]
rs1108159	0.84[ASW][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[ASN][1000 genomes]
rs12332195	0.85[ASN][1000 genomes]
rs16890608	0.85[JPT][hapmap]
rs17366217	0.85[ASN][1000 genomes]
rs28718571	0.85[ASN][1000 genomes]
rs3909434	0.85[ASN][1000 genomes]
rs4079571	0.85[ASN][1000 genomes]
rs57340432	0.85[ASN][1000 genomes]
rs57935172	0.85[ASN][1000 genomes]
rs58431207	0.85[ASN][1000 genomes]
rs61008243	0.85[ASN][1000 genomes]
rs7706828	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024090	chr5:61258759-61921150	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv2757996	chr5:61403138-61687817	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2759345	chr5:61403138-61748912	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv830318	chr5:61415713-61623320	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1020255	chr5:61451792-62031365	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv1027539	chr5:61457762-62000008	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	esv2755585	chr5:61535831-61618595	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
8	nsv881726	chr5:61556730-61676911	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61552800-61557800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr5:61553000-61557800	Enhancers	Primary T cells from cord blood	blood
3	chr5:61553000-61557800	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr5:61553600-61557800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr5:61555000-61557800	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr5:61555200-61559000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:61555400-61558400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr5:61555800-61557800	Enhancers	Primary T cells fromperipheralblood	blood
9	chr5:61556000-61558400	Enhancers	Brain Germinal Matrix	brain
10	chr5:61557200-61557800	Flanking Active TSS	K562	blood
11	chr5:61557400-61557800	Enhancers	HUVEC	blood vessel
12	chr5:61557600-61557800	Active TSS	Primary T killer memory cells from peripheral blood	blood
13	chr5:61557600-61557800	Enhancers	Psoas Muscle	Psoas
14	chr5:61557600-61559600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:61557600-61561000	Weak transcription	Primary hematopoietic stem cells	blood

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