Variant report

Variant	rs13359727
Chromosome Location	chr5:116800499-116800500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10043080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10071503	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12109171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2560505	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs2560506	0.81[EUR][1000 genomes]
rs28515667	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28662851	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4920971	0.80[ASN][1000 genomes]
rs61002039	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62378070	0.80[ASN][1000 genomes]
rs62378080	0.80[ASN][1000 genomes]
rs62378104	0.80[ASN][1000 genomes]
rs73785761	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73785769	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73785771	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73785772	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73785773	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9327042	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9784661	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882756	chr5:116783660-116905052	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116799400-116801000	Enhancers	Rectal Smooth Muscle	rectum
2	chr5:116799600-116801000	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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