Variant report

Variant	rs1336052
Chromosome Location	chr1:86584527-86584528
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1108308	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs11161747	0.81[CHB][hapmap]
rs11161752	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs11161754	0.84[EUR][1000 genomes]
rs11161755	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs11161756	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs11161757	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs11161758	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs11161759	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs11578172	0.98[EUR][1000 genomes]
rs11579660	1.00[CEU][hapmap]
rs11581251	0.82[EUR][1000 genomes]
rs12049014	0.83[ASN][1000 genomes]
rs12068500	0.80[EUR][1000 genomes]
rs12072489	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs12072806	0.82[EUR][1000 genomes]
rs12074275	0.84[EUR][1000 genomes]
rs12076366	0.87[CEU][hapmap]
rs1414601	0.84[EUR][1000 genomes]
rs1507265	0.82[YRI][hapmap]
rs1507268	0.82[EUR][1000 genomes]
rs1507276	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs1507282	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs1507283	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs1507292	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs17128866	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs1948962	0.81[CHB][hapmap]
rs1995687	0.82[YRI][hapmap]
rs2174767	0.81[YRI][hapmap]
rs2174768	0.82[EUR][1000 genomes]
rs2279948	0.82[EUR][1000 genomes]
rs2390012	0.81[CHB][hapmap]
rs2892908	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs41287729	0.88[EUR][1000 genomes]
rs4631724	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs6576804	0.82[YRI][hapmap]
rs6660694	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs6680321	0.81[CHB][hapmap]
rs72716183	0.98[EUR][1000 genomes]
rs72716185	0.90[EUR][1000 genomes]
rs72716190	0.84[EUR][1000 genomes]
rs72716192	0.90[EUR][1000 genomes]
rs72716194	0.84[EUR][1000 genomes]
rs72716202	0.84[EUR][1000 genomes]
rs72718016	0.84[EUR][1000 genomes]
rs72718019	0.82[EUR][1000 genomes]
rs72718037	0.82[EUR][1000 genomes]
rs954354	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817212	chr1:86127851-86658426	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv546722	chr1:86278315-86891073	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1010312	chr1:86469730-86686426	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1012467	chr1:86494935-86686426	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1009092	chr1:86532988-86724805	Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv535024	chr1:86532988-86724805	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv830481	chr1:86550274-86737290	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86578600-86585200	Weak transcription	Fetal Lung	lung
2	chr1:86581400-86584600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:86584400-86585600	Enhancers	Dnd41	blood

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