Variant report

Variant	rs1336590
Chromosome Location	chr13:65108261-65108262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11148647	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11148648	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1544135	0.87[EUR][1000 genomes]
rs17088301	0.80[EUR][1000 genomes]
rs2027211	0.80[EUR][1000 genomes]
rs4144235	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4884580	0.82[ASN][1000 genomes]
rs4884581	0.81[EUR][1000 genomes]
rs59045258	0.82[ASN][1000 genomes]
rs7332525	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7338871	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7990152	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7992675	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7996502	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9540134	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9540135	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9540144	0.80[EUR][1000 genomes]
rs9540147	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455914	chr13:64432922-65368490	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv561965	chr13:64432922-65368490	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3367739	chr13:64805577-65549276	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv900344	chr13:64868768-65193124	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv900346	chr13:64999866-65198145	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv428606	chr13:65008453-65158452	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2756123	chr13:65057812-65113646	Weak transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv900348	chr13:65074137-65193124	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:65104200-65108400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr13:65107600-65109000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:65107800-65109200	Enhancers	H9 Cell Line	embryonic stem cell
4	chr13:65107800-65109200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr13:65107800-65109400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr13:65107800-65109600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr13:65108000-65109200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr13:65108000-65109600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr13:65108200-65109000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr13:65108200-65109200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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