Variant report

Variant	rs1337005
Chromosome Location	chr1:197265641-197265642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10801601	0.81[CEU][hapmap];0.85[TSI][hapmap]
rs10922197	0.81[CEU][hapmap]
rs12022402	0.81[CEU][hapmap]
rs12042924	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1337006	0.81[CEU][hapmap];0.82[TSI][hapmap]
rs1337007	0.81[CEU][hapmap]
rs1415210	0.81[CEU][hapmap];0.82[TSI][hapmap]
rs1415343	0.81[CEU][hapmap];0.82[TSI][hapmap]
rs2184850	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4915208	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4915453	0.81[CEU][hapmap]
rs7530522	0.81[CEU][hapmap];0.82[TSI][hapmap]
rs7548481	0.84[CEU][hapmap]
rs7553508	0.81[CEU][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197257400-197273400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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