Variant report

Variant	rs13374061
Chromosome Location	chr1:86141733-86141734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:86045913..86047832-chr1:86140587..86142750,2	MCF-7	breast:
2	chr1:86141030..86142726-chr1:86173896..86175768,2	K562	blood:

Variant related genes	Relation type
ENSG00000117174	Chromatin interaction
ENSG00000142871	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10047152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12239994	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13376192	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17128307	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv3391173	chr1:86005637-86337469	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv817212	chr1:86127851-86658426	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86103400-86173000	Weak transcription	Pancreas	Pancrea
2	chr1:86103600-86142200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr1:86103600-86145400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:86103600-86145600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:86103600-86157400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:86103600-86172600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:86103600-86172600	Weak transcription	Gastric	stomach
8	chr1:86114000-86143600	Weak transcription	Colon Smooth Muscle	Colon
9	chr1:86114400-86142200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr1:86114400-86163200	Weak transcription	Esophagus	oesophagus
11	chr1:86115200-86146800	Weak transcription	Psoas Muscle	Psoas
12	chr1:86115200-86167600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr1:86116400-86143600	Weak transcription	Brain Hippocampus Middle	brain
14	chr1:86116400-86146200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr1:86116600-86142200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:86116600-86145400	Weak transcription	Fetal Stomach	stomach
17	chr1:86117000-86165800	Weak transcription	Fetal Brain Female	brain
18	chr1:86117600-86172000	Weak transcription	Small Intestine	intestine
19	chr1:86119200-86142200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr1:86119200-86142200	Weak transcription	Placenta	Placenta
21	chr1:86119400-86142200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr1:86119400-86142200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr1:86119400-86143400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr1:86119600-86142200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr1:86119600-86157800	Weak transcription	Hela-S3	cervix
26	chr1:86119600-86172000	Weak transcription	Colonic Mucosa	Colon
27	chr1:86119800-86171800	Weak transcription	Fetal Brain Male	brain
28	chr1:86120000-86142000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr1:86120000-86142000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr1:86120200-86144000	Weak transcription	Brain Anterior Caudate	brain
31	chr1:86120200-86146200	Weak transcription	Brain Angular Gyrus	brain
32	chr1:86127600-86142000	Weak transcription	A549	lung
33	chr1:86127600-86146800	Weak transcription	Fetal Kidney	kidney
34	chr1:86128600-86146000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr1:86129000-86144600	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr1:86129400-86146800	Weak transcription	Aorta	Aorta
37	chr1:86129400-86147000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr1:86129600-86144000	Strong transcription	Primary B cells from cord blood	blood
39	chr1:86130000-86144400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr1:86132800-86165800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr1:86133600-86144600	Strong transcription	HSMM	muscle
42	chr1:86133600-86163400	Weak transcription	Fetal Heart	heart
43	chr1:86133800-86142000	Weak transcription	Brain Germinal Matrix	brain
44	chr1:86134000-86144600	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr1:86134200-86172600	Weak transcription	Right Ventricle	heart
46	chr1:86134600-86143800	Strong transcription	Primary T cells from cord blood	blood
47	chr1:86134600-86144400	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr1:86134600-86172400	Weak transcription	Stomach Mucosa	stomach
49	chr1:86135200-86171200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr1:86135400-86144400	Strong transcription	Primary B cells from peripheral blood	blood

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