Variant report

Variant	rs13374655
Chromosome Location	chr1:215567160-215567161
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10127809	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10465665	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10864176	1.00[EUR][1000 genomes]
rs11120520	1.00[EUR][1000 genomes]
rs11120521	1.00[EUR][1000 genomes]
rs11120523	1.00[EUR][1000 genomes]
rs11120553	1.00[EUR][1000 genomes]
rs11120555	1.00[EUR][1000 genomes]
rs11120556	1.00[EUR][1000 genomes]
rs11120570	1.00[EUR][1000 genomes]
rs11120571	1.00[EUR][1000 genomes]
rs11120572	1.00[EUR][1000 genomes]
rs11120573	1.00[EUR][1000 genomes]
rs11120574	1.00[EUR][1000 genomes]
rs12061570	1.00[EUR][1000 genomes]
rs12070211	1.00[EUR][1000 genomes]
rs12074526	1.00[EUR][1000 genomes]
rs12076291	1.00[EUR][1000 genomes]
rs12076683	1.00[EUR][1000 genomes]
rs12077050	1.00[EUR][1000 genomes]
rs12077731	1.00[EUR][1000 genomes]
rs12077775	1.00[EUR][1000 genomes]
rs12078628	1.00[EUR][1000 genomes]
rs12079873	1.00[EUR][1000 genomes]
rs12080017	1.00[EUR][1000 genomes]
rs12094048	1.00[EUR][1000 genomes]
rs12095159	1.00[EUR][1000 genomes]
rs12239472	1.00[EUR][1000 genomes]
rs12239509	1.00[EUR][1000 genomes]
rs13374480	1.00[EUR][1000 genomes]
rs1416650	1.00[EUR][1000 genomes]
rs1556904	1.00[EUR][1000 genomes]
rs17024391	1.00[EUR][1000 genomes]
rs17024744	0.97[AFR][1000 genomes]
rs17024751	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17024755	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17024758	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17024855	1.00[EUR][1000 genomes]
rs1911547	1.00[EUR][1000 genomes]
rs35134381	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4082520	1.00[EUR][1000 genomes]
rs4082521	1.00[EUR][1000 genomes]
rs4265403	1.00[EUR][1000 genomes]
rs4593794	1.00[EUR][1000 genomes]
rs4607849	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4633260	1.00[EUR][1000 genomes]
rs5019190	1.00[EUR][1000 genomes]
rs56799360	1.00[EUR][1000 genomes]
rs57309511	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57501351	1.00[EUR][1000 genomes]
rs59473177	1.00[EUR][1000 genomes]
rs60597792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61070702	1.00[EUR][1000 genomes]
rs61272547	1.00[EUR][1000 genomes]
rs6678266	1.00[EUR][1000 genomes]
rs6690170	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6695816	1.00[EUR][1000 genomes]
rs73091976	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73091981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73091984	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73091986	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73091996	1.00[EUR][1000 genomes]
rs7516768	1.00[EUR][1000 genomes]
rs950987	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215563400-215568000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr1:215565400-215567400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:215567000-215567400	Enhancers	Cortex derived primary cultured neurospheres	brain

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