Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr1:220747394-220747663	U2OS	brain:	n/a	n/a
2	SETDB1	chr1:220747099-220747919	U2OS	brain:	n/a	n/a
3	KAP1	chr1:220747269-220747646	HEK293	kidney:	n/a	n/a

Variant related genes	Relation type
RN7SL464P	TF binding region

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1073461	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11803495	1.00[EUR][1000 genomes]
rs1193031	0.84[AMR][1000 genomes]
rs2786612	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59609557	1.00[EUR][1000 genomes]
rs6541152	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6541153	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660022	1.00[ASN][1000 genomes]
rs6667072	1.00[EUR][1000 genomes]
rs6668644	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6669644	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6672055	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6676985	1.00[ASN][1000 genomes]
rs6696723	0.87[EUR][1000 genomes]
rs73093505	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093521	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093530	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73101842	0.87[EUR][1000 genomes]
rs73101870	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73107667	1.00[EUR][1000 genomes]
rs7512507	0.87[EUR][1000 genomes]
rs767374	1.00[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220739200-220748200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:220742200-220749600	Weak transcription	Aorta	Aorta
3	chr1:220745200-220748200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:220746800-220748600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:220747400-220748000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
6	chr1:220747400-220748400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
7	chr1:220747400-220748600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:220747400-220748600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
9	chr1:220747600-220748000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:220747600-220748200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:220747600-220748400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

Quick Search: