Variant report

Variant	rs13376274
Chromosome Location	chr1:215546346-215546347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr1:215546217-215546552	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215542629..215544748-chr1:215545652..215547267,2	K562	blood:

Variant related genes	Relation type
VDAC1P10	TF binding region

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10127809	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10494998	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10494999	0.93[ASN][1000 genomes]
rs11120554	0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11120588	0.81[ASN][1000 genomes]
rs11120591	0.81[ASN][1000 genomes]
rs12062740	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12064396	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12066481	1.00[ASN][1000 genomes]
rs12070874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12080428	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12084684	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12089271	0.81[ASN][1000 genomes]
rs12093830	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13376355	1.00[ASN][1000 genomes]
rs1395722	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1557172	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs17024732	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17024744	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17024755	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17024758	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1876407	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1876408	1.00[ASN][1000 genomes]
rs2885989	0.92[ASN][1000 genomes]
rs35134381	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3845523	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4607849	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56802573	1.00[ASN][1000 genomes]
rs56956076	0.81[ASN][1000 genomes]
rs56988669	0.85[ASN][1000 genomes]
rs57110734	0.92[ASN][1000 genomes]
rs57309511	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57379455	0.92[ASN][1000 genomes]
rs57628126	0.81[ASN][1000 genomes]
rs57758604	0.81[ASN][1000 genomes]
rs57792259	0.85[ASN][1000 genomes]
rs58163611	0.92[ASN][1000 genomes]
rs58330534	0.81[ASN][1000 genomes]
rs58342290	1.00[ASN][1000 genomes]
rs58425452	0.81[ASN][1000 genomes]
rs58542168	0.81[ASN][1000 genomes]
rs58557470	0.81[ASN][1000 genomes]
rs58594611	0.81[ASN][1000 genomes]
rs58597977	0.81[ASN][1000 genomes]
rs58629829	0.81[ASN][1000 genomes]
rs58649725	0.81[ASN][1000 genomes]
rs58836680	0.81[ASN][1000 genomes]
rs58919310	0.81[ASN][1000 genomes]
rs59040705	0.81[ASN][1000 genomes]
rs59233975	0.81[ASN][1000 genomes]
rs59628625	0.92[ASN][1000 genomes]
rs60026262	0.92[ASN][1000 genomes]
rs60365921	0.81[ASN][1000 genomes]
rs60404320	0.88[ASN][1000 genomes]
rs60620576	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61057668	1.00[ASN][1000 genomes]
rs61059263	1.00[ASN][1000 genomes]
rs61167296	1.00[ASN][1000 genomes]
rs61343540	0.85[ASN][1000 genomes]
rs61362928	0.93[ASN][1000 genomes]
rs61368758	0.81[ASN][1000 genomes]
rs61400453	1.00[ASN][1000 genomes]
rs61600848	0.92[ASN][1000 genomes]
rs61618553	0.92[ASN][1000 genomes]
rs61633090	0.81[ASN][1000 genomes]
rs61685588	0.81[ASN][1000 genomes]
rs6674016	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6678049	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6679048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6686570	1.00[ASN][1000 genomes]
rs6689680	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs73081443	0.81[ASN][1000 genomes]
rs73081447	0.81[ASN][1000 genomes]
rs73081459	0.81[ASN][1000 genomes]
rs73081470	0.81[ASN][1000 genomes]
rs73081479	0.81[ASN][1000 genomes]
rs73081487	0.81[ASN][1000 genomes]
rs73081497	0.81[ASN][1000 genomes]
rs73083410	0.81[ASN][1000 genomes]
rs73083415	0.81[ASN][1000 genomes]
rs73083420	0.81[ASN][1000 genomes]
rs73083421	0.81[ASN][1000 genomes]
rs73083429	0.81[ASN][1000 genomes]
rs73083436	0.81[ASN][1000 genomes]
rs73083437	0.81[ASN][1000 genomes]
rs73083461	0.81[ASN][1000 genomes]
rs73083470	0.81[ASN][1000 genomes]
rs73090166	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73090172	1.00[ASN][1000 genomes]
rs73090177	1.00[ASN][1000 genomes]
rs73090179	1.00[ASN][1000 genomes]
rs73091959	1.00[ASN][1000 genomes]
rs73091984	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73091986	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73091998	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73094106	0.92[ASN][1000 genomes]
rs73094120	0.81[ASN][1000 genomes]
rs73100105	0.81[ASN][1000 genomes]
rs73100108	0.81[ASN][1000 genomes]
rs73100110	0.81[ASN][1000 genomes]
rs73100116	0.81[ASN][1000 genomes]
rs73100129	0.81[ASN][1000 genomes]
rs73100141	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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