Variant report

Variant	rs13379214
Chromosome Location	chr14:33180138-33180139
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:33179998..33180960-chr14:33469089..33469812,2	MCF-7	breast:
2	chr14:33180094..33180909-chr14:33467256..33468196,5	MCF-7	breast:
3	chr14:33180083..33180602-chr14:33295763..33296544,2	MCF-7	breast:
4	chr14:33057598..33058377-chr14:33179991..33180930,2	MCF-7	breast:
5	chr14:33179937..33180965-chr14:33467313..33468082,5	MCF-7	breast:
6	chr14:33180042..33180844-chr14:34261545..34262067,2	MCF-7	breast:
7	chr14:33179922..33180975-chr14:33811467..33812228,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10147063	0.82[YRI][hapmap]
rs8013267	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33172600-33191600	Weak transcription	Psoas Muscle	Psoas
2	chr14:33173000-33180200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr14:33173200-33194800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:33177000-33181200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr14:33177000-33181400	Enhancers	Fetal Heart	heart
6	chr14:33177200-33180600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr14:33177400-33180400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:33177400-33180600	Enhancers	Fetal Stomach	stomach
9	chr14:33177400-33181000	Enhancers	Brain Angular Gyrus	brain
10	chr14:33177600-33181000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:33177600-33181200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:33177800-33181800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:33178600-33180400	Weak transcription	HSMM	muscle
14	chr14:33178800-33180600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr14:33178800-33183200	Weak transcription	Aorta	Aorta
16	chr14:33178800-33191600	Weak transcription	Right Ventricle	heart
17	chr14:33179000-33180200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:33179000-33180200	Weak transcription	Osteobl	bone
19	chr14:33179000-33181000	Enhancers	NHDF-Ad	bronchial
20	chr14:33179000-33193400	Weak transcription	HSMMtube	muscle
21	chr14:33179400-33180200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr14:33179400-33180200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr14:33179400-33180400	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr14:33179400-33180600	Flanking Active TSS	Fetal Lung	lung
25	chr14:33179600-33180200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:33179600-33180200	Active TSS	Brain Anterior Caudate	brain
27	chr14:33179600-33180200	Flanking Active TSS	Brain Hippocampus Middle	brain
28	chr14:33179600-33180200	Flanking Active TSS	Brain Substantia Nigra	brain
29	chr14:33179600-33180400	Flanking Active TSS	Adipose Nuclei	Adipose
30	chr14:33179600-33180600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr14:33179600-33180600	Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr14:33179800-33180200	Flanking Active TSS	Colon Smooth Muscle	Colon
33	chr14:33179800-33180200	Flanking Active TSS	Rectal Smooth Muscle	rectum
34	chr14:33179800-33180800	Enhancers	Fetal Muscle Leg	muscle
35	chr14:33179800-33181000	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr14:33180000-33180200	Flanking Active TSS	Brain Cingulate Gyrus	brain
37	chr14:33180000-33180200	Flanking Active TSS	Duodenum Mucosa	Duodenum
38	chr14:33180000-33180200	Flanking Active TSS	Ovary	ovary
39	chr14:33180000-33180200	Flanking Active TSS	Right Atrium	heart
40	chr14:33180000-33180400	Active TSS	Stomach Smooth Muscle	stomach
41	chr14:33180000-33180600	Enhancers	Left Ventricle	heart
42	chr14:33180000-33180600	Enhancers	NH-A	brain
43	chr14:33180000-33180800	Enhancers	NHLF	lung

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