Variant report

Variant	rs13379482
Chromosome Location	chr14:77952423-77952424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ISM2	TF binding region
ENSG00000100593	Chromatin interaction
ENSG00000151445	Chromatin interaction
ENSG00000100591	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10147023	1.00[CEU][hapmap];0.95[YRI][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10149323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12433414	0.86[EUR][1000 genomes]
rs28776598	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4903589	0.89[EUR][1000 genomes]
rs6574379	0.82[EUR][1000 genomes]
rs7147867	0.89[EUR][1000 genomes]
rs7155181	0.86[EUR][1000 genomes]
rs73319055	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8004601	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs8010250	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs8010934	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77947200-77956200	Strong transcription	HepG2	liver
2	chr14:77948800-77953400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:77949400-77952800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:77949400-77955600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:77950400-77957000	Weak transcription	Fetal Kidney	kidney
6	chr14:77951600-77953200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr14:77951600-77957000	Weak transcription	Placenta	Placenta
8	chr14:77951800-77953000	Enhancers	NHDF-Ad	bronchial
9	chr14:77951800-77953200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:77952000-77952800	Enhancers	HSMM	muscle
11	chr14:77952000-77955600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:77952200-77953400	Enhancers	NH-A	brain
13	chr14:77952400-77952800	Enhancers	HSMMtube	muscle
14	chr14:77952400-77953200	Enhancers	Osteobl	bone
15	chr14:77952400-77957000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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