Variant report

Variant	rs1338164
Chromosome Location	chr6:101870847-101870848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1415948	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415949	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1415950	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1890275	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890276	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890277	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2225913	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246465	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2246550	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2246551	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2518156	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2518184	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2787566	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2788283	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2788284	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2852517	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2852522	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2852523	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2852524	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56245206	0.93[ASN][1000 genomes]
rs6909593	0.93[ASN][1000 genomes]
rs6910891	0.93[ASN][1000 genomes]
rs6918619	0.93[ASN][1000 genomes]
rs6938046	0.93[ASN][1000 genomes]
rs6938300	0.93[ASN][1000 genomes]
rs6939312	0.93[ASN][1000 genomes]
rs73502639	0.93[ASN][1000 genomes]
rs73502645	0.93[ASN][1000 genomes]
rs73502647	0.93[ASN][1000 genomes]
rs9498587	0.93[ASN][1000 genomes]
rs9498588	0.93[ASN][1000 genomes]
rs9498589	0.93[ASN][1000 genomes]
rs953802	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101851000-101882000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:101860800-101871000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:101864400-101871000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:101864400-101882800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:101869200-101878400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:101870000-101871000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:101870000-101871200	Enhancers	Fetal Brain Male	brain
8	chr6:101870400-101871000	Enhancers	Fetal Brain Female	brain
9	chr6:101870600-101882600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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