Variant report

Variant	rs13382265
Chromosome Location	chr2:210480936-210480937
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10179315	0.91[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10203283	1.00[EUR][1000 genomes]
rs1039826	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12694184	0.85[EUR][1000 genomes]
rs12694187	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12988159	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13008317	0.92[EUR][1000 genomes]
rs13404929	0.92[EUR][1000 genomes]
rs13412699	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13423655	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13432745	0.85[EUR][1000 genomes]
rs13432941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1396778	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1509467	0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1509471	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16843236	0.86[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1828281	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1949041	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1962197	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1967262	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2063292	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2663644	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2663656	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2710476	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28517694	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs288072	0.92[EUR][1000 genomes]
rs288075	0.85[EUR][1000 genomes]
rs288076	0.85[EUR][1000 genomes]
rs288077	0.85[EUR][1000 genomes]
rs288080	0.85[EUR][1000 genomes]
rs288085	0.85[EUR][1000 genomes]
rs35568286	0.85[EUR][1000 genomes]
rs56676438	0.85[EUR][1000 genomes]
rs60751322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6435533	0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6752060	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71420765	0.92[EUR][1000 genomes]
rs7566048	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7603837	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9288411	0.85[EUR][1000 genomes]
rs992991	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210474000-210481400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:210476600-210493600	Weak transcription	Aorta	Aorta
3	chr2:210477200-210481600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr2:210479200-210484600	Weak transcription	Fetal Brain Male	brain
5	chr2:210479400-210481200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:210479800-210481200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr2:210480000-210481000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:210480000-210493200	Weak transcription	Brain Germinal Matrix	brain
9	chr2:210480200-210481000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr2:210480200-210481200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:210480400-210481000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr2:210480400-210481400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:210480400-210481800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr2:210480400-210482000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:210480600-210481000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:210480600-210481000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
17	chr2:210480600-210481000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:210480600-210481400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
19	chr2:210480600-210482200	Enhancers	Placenta	Placenta
20	chr2:210480800-210481000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr2:210480800-210481000	ZNF genes & repeats	Pancreas	Pancrea
22	chr2:210480800-210481200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
23	chr2:210480800-210481600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links