Variant report

Variant	rs1338774
Chromosome Location	chr1:220622393-220622394
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10863556	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1338775	0.90[AFR][1000 genomes]
rs1338776	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1856434	1.00[EUR][1000 genomes]
rs1933878	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1933879	1.00[EUR][1000 genomes]
rs1933881	0.81[AFR][1000 genomes]
rs2153130	1.00[EUR][1000 genomes]
rs2185156	1.00[EUR][1000 genomes]
rs2378387	1.00[EUR][1000 genomes]
rs4598492	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7525770	0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7537327	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv945300	chr1:220621462-220622701	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220610000-220624000	Weak transcription	Fetal Heart	heart
2	chr1:220617600-220622400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:220620400-220624400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:220620600-220626800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr1:220621200-220624600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:220622200-220624600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:220622200-220624800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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