Variant report

Variant	rs13390055
Chromosome Location	chr2:37498452-37498453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37493948..37499584-chr2:37500018..37504344,8	K562	blood:

Variant related genes	Relation type
ENSG00000115825	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10201396	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10204434	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10206380	0.85[JPT][hapmap]
rs10460527	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11124570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11124573	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11124577	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1160516	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11887618	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12469082	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12471267	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12476195	0.88[ASN][1000 genomes]
rs13412560	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13421912	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13429526	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs17020358	0.86[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs2041838	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs2041839	0.90[ASN][1000 genomes]
rs2075215	0.95[JPT][hapmap]
rs2075216	0.95[JPT][hapmap]
rs2192939	0.91[ASN][1000 genomes]
rs2216114	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2239650	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs2251879	0.91[ASN][1000 genomes]
rs2268988	0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs2287091	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2287092	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2300883	0.86[ASN][1000 genomes]
rs2300886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2300887	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2300888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2300891	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2300894	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2300895	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2302649	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28524149	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3213746	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs3755192	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs3770761	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3770767	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3821144	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4610034	0.82[ASN][1000 genomes]
rs4629138	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs4670682	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4670684	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4670685	0.82[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57861177	0.88[ASN][1000 genomes]
rs59559471	0.88[ASN][1000 genomes]
rs6709930	0.87[ASN][1000 genomes]
rs73927424	0.88[ASN][1000 genomes]
rs7593932	0.84[JPT][hapmap]
rs9309002	0.98[ASN][1000 genomes]
rs9309003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs952711	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs952712	0.81[CHB][hapmap];0.95[JPT][hapmap]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37460000-37501600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:37460200-37528600	Weak transcription	Stomach Mucosa	stomach
3	chr2:37460400-37498600	Weak transcription	Gastric	stomach
4	chr2:37460600-37498600	Weak transcription	Spleen	Spleen
5	chr2:37461200-37518800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:37463400-37509600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:37467600-37530200	Weak transcription	Pancreas	Pancrea
8	chr2:37470400-37498600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:37470400-37521600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:37470800-37521400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:37476800-37501400	Weak transcription	Esophagus	oesophagus
12	chr2:37477400-37502200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr2:37479400-37520600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr2:37479800-37501600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr2:37480600-37505000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr2:37481600-37500800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr2:37482600-37501800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr2:37482800-37498600	Weak transcription	Lung	lung
19	chr2:37482800-37528600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr2:37483400-37498600	Weak transcription	HSMMtube	muscle
21	chr2:37483600-37498600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr2:37484200-37501600	Weak transcription	K562	blood
23	chr2:37484200-37539000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr2:37484400-37511600	Weak transcription	Fetal Brain Male	brain
25	chr2:37484600-37498600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr2:37484600-37498600	Weak transcription	NHEK	skin
27	chr2:37484600-37500000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr2:37484600-37500400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr2:37484600-37501400	Weak transcription	Colonic Mucosa	Colon
30	chr2:37484600-37550400	Weak transcription	Right Ventricle	heart
31	chr2:37484800-37498600	Weak transcription	Aorta	Aorta
32	chr2:37486200-37501600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr2:37486400-37501200	Weak transcription	Psoas Muscle	Psoas
34	chr2:37486600-37499000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr2:37487200-37528600	Weak transcription	Brain Substantia Nigra	brain
36	chr2:37487600-37521200	Weak transcription	Brain Angular Gyrus	brain
37	chr2:37489200-37500000	Strong transcription	NHDF-Ad	bronchial
38	chr2:37490400-37498600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr2:37490400-37503400	Strong transcription	Liver	Liver
40	chr2:37490400-37507000	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr2:37490400-37510800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr2:37490600-37521000	Strong transcription	Dnd41	blood
43	chr2:37491000-37503200	Strong transcription	Fetal Muscle Leg	muscle
44	chr2:37491000-37512400	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr2:37491200-37501600	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr2:37491200-37503600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr2:37491200-37510200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr2:37491200-37510200	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr2:37491600-37503000	Strong transcription	Fetal Thymus	thymus
50	chr2:37491800-37501600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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