Variant report

Variant	rs1339343
Chromosome Location	chr1:216847421-216847422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11117658	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];0.97[TSI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11572700	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11572706	0.93[GIH][hapmap]
rs11580756	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1416620	0.82[ASW][hapmap]
rs17627954	0.88[CEU][hapmap];0.88[GIH][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes]
rs17679272	0.83[CEU][hapmap];0.85[GIH][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes]
rs1953523	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4259728	0.82[ASW][hapmap];0.94[CEU][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes]
rs72737371	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216787400-216853800	Weak transcription	Pancreas	Pancrea
2	chr1:216814000-216856200	Weak transcription	Psoas Muscle	Psoas
3	chr1:216820400-216855400	Weak transcription	Fetal Heart	heart
4	chr1:216826000-216856200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:216834400-216860400	Weak transcription	Right Ventricle	heart
6	chr1:216838400-216850000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr1:216840000-216850600	Weak transcription	Gastric	stomach
8	chr1:216840200-216863600	Weak transcription	Fetal Intestine Small	intestine
9	chr1:216840400-216853600	Weak transcription	Fetal Intestine Large	intestine
10	chr1:216842200-216855400	Weak transcription	Fetal Stomach	stomach
11	chr1:216844000-216860000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:216844200-216849200	Weak transcription	Left Ventricle	heart
13	chr1:216844200-216861000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr1:216844400-216848200	Weak transcription	Placenta	Placenta
15	chr1:216844800-216852400	Weak transcription	Fetal Muscle Leg	muscle
16	chr1:216846000-216850000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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