Variant report

Variant	rs1339350
Chromosome Location	chr1:216925330-216925331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10863269	0.88[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11117667	0.90[EUR][1000 genomes]
rs11117668	0.87[CEU][hapmap];0.97[EUR][1000 genomes]
rs11117669	0.94[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12070175	0.82[ASW][hapmap];0.94[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12402813	0.83[CEU][hapmap];0.99[EUR][1000 genomes]
rs12403401	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1339357	0.81[ASN][1000 genomes]
rs17043393	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs17043570	0.81[CEU][hapmap];0.80[CHD][hapmap];0.82[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs17043610	0.88[CEU][hapmap];0.97[EUR][1000 genomes]
rs2789730	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2789732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2789733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2813697	0.83[YRI][hapmap]
rs2813698	0.81[YRI][hapmap]
rs2820875	0.94[CEU][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2820876	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2820878	0.84[ASN][1000 genomes]
rs2999504	1.00[CHB][hapmap];0.81[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs61318304	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61819764	0.86[EUR][1000 genomes]
rs61819766	0.90[EUR][1000 genomes]
rs61819772	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1339350	TGFB2	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216897400-216958600	Weak transcription	Pancreas	Pancrea
2	chr1:216911600-216934200	Weak transcription	Psoas Muscle	Psoas
3	chr1:216922400-216925400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:216922400-216931400	Weak transcription	Right Atrium	heart
5	chr1:216922600-216925400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:216925000-216926200	Weak transcription	Fetal Heart	heart
7	chr1:216925200-216931800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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