Variant report

Variant	rs1339352
Chromosome Location	chr1:216915514-216915515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11572653	0.92[JPT][hapmap]
rs12737688	0.92[JPT][hapmap]
rs12757183	0.92[JPT][hapmap]
rs1416620	0.83[GIH][hapmap]
rs2813702	0.83[YRI][hapmap]
rs2813704	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs871556	0.85[JPT][hapmap];0.81[YRI][hapmap]
rs871557	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs946473	0.83[YRI][hapmap]
rs946475	0.92[JPT][hapmap];0.81[YRI][hapmap]
rs956543	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508694	chr1:216901014-216923883	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	esv3391131	chr1:216913679-216915827	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216897400-216958600	Weak transcription	Pancreas	Pancrea
2	chr1:216911600-216934200	Weak transcription	Psoas Muscle	Psoas
3	chr1:216914000-216915600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr1:216914000-216916200	Weak transcription	Fetal Heart	heart
5	chr1:216914200-216917800	Weak transcription	Fetal Brain Female	brain
6	chr1:216914400-216915600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr1:216914400-216923400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr1:216914800-216915600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr1:216915000-216916200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:216915400-216915600	Enhancers	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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