The 2.0 version of rSNPBase

Variant report

Variant rs13394717
Chromosome Location chr2:11269236-11269237
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:11262200-11269800 Weak transcription Ovary ovary
2 chr2:11262800-11269600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
3 chr2:11263400-11269800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr2:11263600-11269800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr2:11264600-11269600 Weak transcription Cortex derived primary cultured neurospheres brain
6 chr2:11264800-11269800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
7 chr2:11265000-11269400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
8 chr2:11265000-11269800 Weak transcription Brain Anterior Caudate brain
9 chr2:11265200-11269600 Weak transcription Brain Inferior Temporal Lobe brain
10 chr2:11265200-11269800 Weak transcription Liver Liver
11 chr2:11265400-11269600 Weak transcription A549 lung
12 chr2:11268000-11269600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr2:11268000-11269600 Enhancers Fetal Thymus thymus
14 chr2:11268000-11269800 Enhancers Primary hematopoietic stem cells short term culture blood
15 chr2:11268200-11269400 Weak transcription Primary T cells fromperipheralblood blood
16 chr2:11268200-11269600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr2:11268400-11269800 Enhancers Fetal Stomach stomach
18 chr2:11268400-11269800 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr2:11268400-11269800 Enhancers HMEC breast
20 chr2:11268400-11270000 Enhancers NHLF lung
21 chr2:11268400-11270600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
22 chr2:11268400-11270600 Enhancers NH-A brain
23 chr2:11268600-11269400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr2:11268600-11269400 Enhancers Thymus Thymus
25 chr2:11268600-11269600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
26 chr2:11268600-11269600 Weak transcription Primary hematopoietic stem cells blood
27 chr2:11268600-11269600 Weak transcription Primary T helper naive cells fromperipheralblood blood
28 chr2:11268600-11269600 Enhancers Fetal Muscle Leg muscle
29 chr2:11268600-11269800 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
30 chr2:11268600-11269800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
31 chr2:11268600-11269800 Enhancers Adipose Nuclei Adipose
32 chr2:11268600-11269800 Enhancers Duodenum Mucosa Duodenum
33 chr2:11268600-11270200 Enhancers NHDF-Ad bronchial
34 chr2:11268800-11269600 Weak transcription Primary T helper naive cells from peripheral blood blood
35 chr2:11268800-11269600 Weak transcription Stomach Smooth Muscle stomach
36 chr2:11268800-11269800 Weak transcription Breast Myoepithelial Primary Cells Breast
37 chr2:11268800-11269800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
38 chr2:11268800-11269800 Weak transcription Primary T killer naive cells fromperipheralblood blood
39 chr2:11268800-11269800 Weak transcription Gastric stomach
40 chr2:11268800-11269800 Weak transcription Pancreas Pancrea
41 chr2:11268800-11269800 Weak transcription Right Atrium heart
42 chr2:11268800-11270000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
43 chr2:11268800-11270200 Weak transcription Spleen Spleen
44 chr2:11269000-11269400 Weak transcription Fetal Adrenal Gland Adrenal Gland
45 chr2:11269000-11269600 Enhancers HepG2 liver
46 chr2:11269000-11269800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr2:11269000-11269800 Weak transcription Skeletal Muscle Male skeletal muscle
48 chr2:11269000-11269800 Weak transcription Stomach Mucosa stomach
49 chr2:11269000-11269800 Enhancers NHEK skin
50 chr2:11269000-11270000 Weak transcription HSMM muscle

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Last update: Aug 31, 2015