Variant report

Variant	rs13396043
Chromosome Location	chr2:182616031-182616032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10190772	0.81[CHB][hapmap]
rs10497586	0.88[ASN][1000 genomes]
rs11895376	0.81[CHB][hapmap]
rs12618902	0.84[ASN][1000 genomes]
rs1343793	0.81[CHB][hapmap]
rs1528028	0.84[ASN][1000 genomes]
rs16867494	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16867495	0.81[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs16867496	0.81[ASN][1000 genomes]
rs4597474	0.88[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.88[ASN][1000 genomes]
rs57281910	0.84[ASN][1000 genomes]
rs59159077	0.84[ASN][1000 genomes]
rs60200067	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1001558	chr2:182590009-182732738	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182612800-182619800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:182614400-182617000	Enhancers	Placenta	Placenta
3	chr2:182615200-182616800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:182615400-182618200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:182615400-182618600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr2:182615600-182616600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:182615600-182616800	Enhancers	Placenta Amnion	Placenta Amnion
8	chr2:182615600-182618600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr2:182615600-182620200	Enhancers	Hela-S3	cervix
10	chr2:182615800-182616800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:182615800-182617000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:182616000-182616800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr2:182616000-182618400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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