Variant report

Variant	rs13399193
Chromosome Location	chr2:181822772-181822773
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:181821769..181824895-chr2:181843465..181846009,3	K562	blood:
2	chr2:181816772..181818990-chr2:181821114..181822961,2	K562	blood:

Variant related genes	Relation type
ENSG00000236153	Chromatin interaction
ENSG00000170035	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10167039	0.95[ASN][1000 genomes]
rs10172609	1.00[CHD][hapmap];0.90[GIH][hapmap];0.85[ASN][1000 genomes]
rs10177379	0.85[ASN][1000 genomes]
rs10179247	0.85[ASN][1000 genomes]
rs10180373	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10180999	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10186928	0.85[ASN][1000 genomes]
rs10190282	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10203057	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10203106	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10206321	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13389513	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13396254	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13406482	1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13409312	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13418807	0.85[CHD][hapmap];0.90[GIH][hapmap];0.85[ASN][1000 genomes]
rs13420090	0.85[ASN][1000 genomes]
rs13420661	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13425162	0.95[ASN][1000 genomes]
rs13425730	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13429008	0.85[ASN][1000 genomes]
rs28887797	0.84[ASN][1000 genomes]
rs4077214	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4618006	0.89[ASN][1000 genomes]
rs4618007	0.89[ASN][1000 genomes]
rs6706552	0.95[ASN][1000 genomes]
rs6721173	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6722001	1.00[CHD][hapmap];0.90[GIH][hapmap];0.95[ASN][1000 genomes]
rs6761219	0.95[ASN][1000 genomes]
rs7583129	0.87[LWK][hapmap];0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875476	chr2:181767757-181854997	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181822200-181823600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr2:181822600-181823400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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