Variant report
| Variant | rs1339997 |
|---|---|
| Chromosome Location | chr10:25488242-25488243 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ENKUR-5 | chr10:25487007-25488838 | refGeneNc_2728_NR_027333 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10128299 | 1.00[CEU][hapmap] |
| rs10508690 | 1.00[CEU][hapmap];1.00[MEX][hapmap] |
| rs11014436 | 1.00[CEU][hapmap] |
| rs11014454 | 1.00[CEU][hapmap] |
| rs11014475 | 1.00[CEU][hapmap] |
| rs11014480 | 1.00[CEU][hapmap] |
| rs12250636 | 1.00[CEU][hapmap] |
| rs12258187 | 0.83[AMR][1000 genomes] |
| rs12258880 | 1.00[CEU][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes] |
| rs12263407 | 1.00[CEU][hapmap] |
| rs12265296 | 1.00[CEU][hapmap] |
| rs12265550 | 1.00[CEU][hapmap] |
| rs16925493 | 1.00[CEU][hapmap] |
| rs16925518 | 1.00[CEU][hapmap];1.00[MEX][hapmap] |
| rs7074602 | 1.00[CEU][hapmap] |
| rs7075587 | 1.00[CEU][hapmap] |
| rs7077890 | 1.00[CEU][hapmap] |
| rs7080343 | 1.00[CEU][hapmap];1.00[MEX][hapmap] |
| rs7090132 | 1.00[CEU][hapmap] |
| rs7099168 | 1.00[CEU][hapmap] |
| rs7101272 | 1.00[CEU][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes] |
| rs7902783 | 1.00[CEU][hapmap] |
| rs7903171 | 1.00[CEU][hapmap] |
| rs7906676 | 1.00[CEU][hapmap] |
| rs7918295 | 1.00[CEU][hapmap] |
| rs9988788 | 1.00[CEU][hapmap];1.00[MEX][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv894970 | chr10:25385858-25522280 | Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv894971 | chr10:25403234-25522280 | Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | esv2760160 | chr10:25473747-25496153 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
