Variant report

Variant	rs1340002
Chromosome Location	chr10:25624290-25624291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 131 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs10399962	0.85[JPT][hapmap]
rs10508694	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.93[JPT][hapmap];0.83[LWK][hapmap];0.80[ASN][1000 genomes]
rs10741075	0.92[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap]
rs10741077	0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs10764539	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs10764543	0.83[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs10828770	0.83[CHD][hapmap];0.93[JPT][hapmap]
rs10828774	0.93[JPT][hapmap]
rs10828775	0.92[JPT][hapmap]
rs10828777	0.93[JPT][hapmap]
rs10828778	0.93[JPT][hapmap]
rs10828791	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs10828792	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs10828793	0.83[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs10828807	0.85[JPT][hapmap]
rs11014510	0.86[ASN][1000 genomes]
rs11014527	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs11014528	1.00[CEU][hapmap];0.88[CHD][hapmap];0.93[JPT][hapmap]
rs11014529	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs11014530	0.83[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs11014550	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs11014553	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs11014554	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs11014558	0.81[CHD][hapmap];0.85[JPT][hapmap]
rs11014559	0.85[JPT][hapmap]
rs1122776	0.91[JPT][hapmap]
rs1148154	0.93[JPT][hapmap]
rs11818261	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs12219956	0.86[ASN][1000 genomes]
rs12240665	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs12249852	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs12251868	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs12251917	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs12254479	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs12256778	0.80[ASN][1000 genomes]
rs12256851	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs12258359	0.80[ASN][1000 genomes]
rs12258665	0.80[ASN][1000 genomes]
rs12258671	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs12259043	0.83[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs12259696	0.83[CHB][hapmap];0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs12356315	0.83[LWK][hapmap];0.85[MKK][hapmap]
rs12358447	0.83[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs12762462	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap]
rs12764320	0.80[ASN][1000 genomes]
rs12766749	0.80[ASN][1000 genomes]
rs12773262	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs1329259	0.93[JPT][hapmap]
rs1329263	0.93[JPT][hapmap]
rs1329265	0.93[JPT][hapmap]
rs1341963	0.93[JPT][hapmap]
rs1341964	0.93[JPT][hapmap]
rs1341966	0.93[JPT][hapmap]
rs1410932	0.93[JPT][hapmap]
rs1413397	0.93[JPT][hapmap]
rs1576317	0.93[JPT][hapmap]
rs1576320	0.85[JPT][hapmap]
rs1590836	0.93[JPT][hapmap]
rs1591249	0.93[JPT][hapmap]
rs1591250	0.86[JPT][hapmap]
rs1612200	0.93[JPT][hapmap]
rs1628986	0.93[JPT][hapmap]
rs1754251	0.93[JPT][hapmap]
rs1754253	0.82[JPT][hapmap]
rs1754260	0.92[JPT][hapmap]
rs1754268	0.93[JPT][hapmap]
rs1760716	0.93[JPT][hapmap]
rs1760718	0.93[JPT][hapmap]
rs1760727	0.93[JPT][hapmap]
rs1760728	0.93[JPT][hapmap]
rs1760733	0.93[JPT][hapmap]
rs1760755	0.80[ASN][1000 genomes]
rs1760758	0.93[JPT][hapmap]
rs1760759	0.93[JPT][hapmap]
rs1760762	0.93[JPT][hapmap]
rs1760763	0.93[JPT][hapmap]
rs1760766	0.93[JPT][hapmap]
rs1760767	0.93[JPT][hapmap]
rs1773608	0.93[JPT][hapmap]
rs1773612	0.93[JPT][hapmap]
rs1773614	0.93[JPT][hapmap]
rs1773616	0.93[JPT][hapmap]
rs1773617	0.93[JPT][hapmap]
rs1773618	0.93[JPT][hapmap]
rs1773622	0.93[JPT][hapmap]
rs1773623	0.93[JPT][hapmap]
rs1773625	0.86[JPT][hapmap]
rs1773648	0.82[ASN][1000 genomes]
rs1773649	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs1773650	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs1773651	0.80[ASN][1000 genomes]
rs1773689	0.93[JPT][hapmap]
rs1773690	0.93[JPT][hapmap]
rs1812401	0.84[CHB][hapmap]
rs1855461	0.93[JPT][hapmap]
rs2262989	0.80[ASN][1000 genomes]
rs2795044	0.93[JPT][hapmap]
rs2807245	0.81[ASN][1000 genomes]
rs2807248	0.84[JPT][hapmap]
rs2807250	0.85[CHB][hapmap];0.83[LWK][hapmap]
rs2807253	0.80[CHD][hapmap];0.85[JPT][hapmap]
rs2807255	0.93[JPT][hapmap]
rs35663899	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs35973294	0.80[ASN][1000 genomes]
rs4351726	0.93[JPT][hapmap]
rs4431923	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs476972	0.80[ASN][1000 genomes]
rs489052	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs489186	0.85[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs495338	0.93[JPT][hapmap];0.83[LWK][hapmap];0.81[ASN][1000 genomes]
rs495456	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs509285	0.80[CHD][hapmap];0.93[JPT][hapmap]
rs516071	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs541206	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs543850	0.86[JPT][hapmap]
rs558947	0.85[CHB][hapmap];0.85[JPT][hapmap];0.83[LWK][hapmap]
rs573812	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs7079892	0.93[JPT][hapmap]
rs7090972	0.80[ASN][1000 genomes]
rs7094439	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs824145	0.85[JPT][hapmap]
rs824146	0.85[JPT][hapmap]
rs824147	0.85[CHB][hapmap];0.83[LWK][hapmap]
rs824590	0.92[JPT][hapmap]
rs824592	0.93[JPT][hapmap]
rs824597	0.93[JPT][hapmap]
rs824598	0.93[JPT][hapmap]
rs824599	0.91[JPT][hapmap]
rs862192	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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